GgaINT0103681 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79337187-79338302:+
Coord C1 exon
chr1:79337187-79337346
Coord A exon
chr1:79337347-79338249
Coord C2 exon
chr1:79338250-79338302
Length
903 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGA
5' ss Score
7.63
3' ss Seq
TCTCTGCCTTTGTCCATTAGTCC
3' ss Score
6.45
Exon sequences
Seq C1 exon
ATTCCAAAATCTAGGAGCCAGTCAACAGTCACATTTATTACTGTGACAGTGAAGGGGGAGACTCTGCAGTTCAGAAACCGCAAGTCAGTCCTGGTCAAGAATTCTGAGAGTTTGATCTTCGTCCAGACAGACAAACCCATCTACAAGCCTGGACAGACGG
Seq A exon
GTATGAAGGGGGTGGCGGGGGGGTGGAGATTTGCACTCAGCAGAAATTCCTAAAACTGTTGTGCTATTCAGGCCAGATGTTGACTGCTTTCAGTGGATATTGAAAGATCAGTCTCTCTCTCATGGCTGAGGCGTATGTTTTTAATGCTCCACATGGGAATAATTTGGAGAATTTTAAAGAATATGCATGTAACTGGGGCAGCTACAAACATTTCCTTTGCCGCTGGGAGTTCTGTTGTTGTAGTCCACATGGTTTGATCCCCTTTTTGTGCAGTTTTTAACTCTTTTATTAAAACCACAAAAACTGGAGCAGTGACTGGATATTTATCTTATAGAAAACAGGGTGAAAGTTCAGGCTAAGTCATGAAATAGTTTTCAAAATGGCAGCTGATTTTGCAATATGAAGATAGATAAAACTATATAAGCCATTTCTTCTGGGCCATTCATCTTCTAAACTTGTCCTGGACAGGAACAAATGTCCTAAAAGAGACACTGAATTCTCTGCTTATCCAGAGCCAACACAAACTTGCAGCCAGGTGCTTGCATTCATCCTTCCTGAGAAGTTAATCTAGTTAGAACAAAATTACAAGACACTTGTTAATTCCAATATGAAAACACCATGTTGCAAAGTAGACAAAAGGCAACTTAAATTTAACTTTGGTCTCAATTAAACAGTTTCTGAGCCCACTGTCAGTAAGATGTTCACACTGCCATGATTTTGGTCCTAGCATCCTCTAATTAATATCTCTTACATGGGTAACATAGAACAATTTAGCTTTCCAGTGAATGGAATTTCTGTAGAAGAGAATTCTTCTGTTCTCTTTTGCACCATCTGTGTTTGCAACTAATGTTTTCTGGTTGGTGTCTCCTCTGTGGAACCTCACTCTCTGCCTTTGTCCATTAG
Seq C2 exon
TCCTTTTCAGAATTGTTTCTCTGGATGAAAACTTCCATCCCTTGAATGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=29.6)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTAGGAGCCAGTCAACAGT
R:
CACCTCATTCAAGGGATGGAAGT
Band lengths:
206-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]