MmuINT0041407 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:121959300-121959658:+
Coord C1 exon
chr6:121959300-121959459
Coord A exon
chr6:121959460-121959605
Coord C2 exon
chr6:121959606-121959658
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTCTCTCTCTCTCTCTCCAGTTA
3' ss Score
12.8
Exon sequences
Seq C1 exon
ATCCCTACACTCAACTCTCCTGATGAGGAGGAGTTTCTCTACGTGGACATCAAAGGGCCAACCCACGAATTCAGCAAAAGGAATGCAGTGCTTGTGAAGAACAAAGAAAGTGTTGTCTTTGTCCAGACAGATAAGCCCGTGTACAAGCCAGGACAATCAG
Seq A exon
GTATGAAGCTCTACTGTGGGCAAAGGAATTAAGACACCATCCTGAACATGGCAAGAAGGGCTGTGTCTGTGGACCTCACTAGTAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAG
Seq C2 exon
TTAAATTTCGGGTTGTCTCTATGGATAAAACTCTACGCCCCCTGAATGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
-Cpamd8:NM_008646:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTACACTCAACTCTCCTGA
R:
AACTCATTCAGGGGGCGTAGA
Band lengths:
211-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: