HsaINT0135682 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9354915-9355280:-
Coord C1 exon
chr12:9355121-9355280
Coord A exon
chr12:9354968-9355120
Coord C2 exon
chr12:9354915-9354967
Length
153 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCGGAGAACTACTTTTCCAGTAA
3' ss Score
0.7
Exon sequences
Seq C1 exon
CTCCCAAGGATCTCAGCCTCTTCAGAGGTGGCATTCCTTAGCATCCAGATAAAGGGGCCTACGCAAGATTTCAGGAAGAGGAACACAGTTCTGGTACTGAACACCCAAAGTCTGGTCTTTGTCCAGACAGACAAACCCATGTATAAACCAGGACAGACAG
Seq A exon
GTAAGTAGGGAAATTCCACTGTTTGGGGCAACACTGAGAAGGGCCACCTGAACAGCCAAAGTCTCCATTATCCTAGCCCCGTAGCCTCCTGTCTTATTACCCAAATTACCTGCTTTATCATGTCTGAATCTTATCGGAGAACTACTTTTCCAG
Seq C2 exon
TAAGATTCCGTGTTGTCTCCGTGGATGAAAATTTTCGCCCTCGAAATGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=29.6),PF077039=A2M_N_2=PU(12.2=27.8)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100),PF077039=A2M_N_2=FE(13.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAAGGATCTCAGCCTCT
R:
CAGTTCATTTCGAGGGCGA
Band lengths:
213-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)