BtaINT0007458 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101213883-101214233:+
Coord C1 exon
chr5:101213883-101214033
Coord A exon
chr5:101214034-101214180
Coord C2 exon
chr5:101214181-101214233
Length
147 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
GAAAAATCTCTGTGTTTCAGTGC
3' ss Score
7.24
Exon sequences
Seq C1 exon
ATTCCGGATTCTTTTCCCTTCGCATTCATAACCGTGCAGGTGCAAGGACCAACCCAGAACTTCATAAAGAAGAAGCCAATATACATTACAAAAGCAGAAAGCCTAGTCTTTGTCCAGACAGACAAACCCATCTACAAGCCAGGACAAACAG
Seq A exon
GTATAAGGAACTAAACAAGCAAAGGCAATCTGAAGGGTTGGAGGTGTAGTTCTCTGTTACCTTTTGGAAATCCTGGCACATTGTTATTTGTGTTACCACCCTGAATTTCCATTGGCGGCTTTCATGAGAAAAATCTCTGTGTTTCAG
Seq C2 exon
TGCAATTCCGCATTTTCTCTGTGGATGTCAACTTTCACCCTTTGAATGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=31.4)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGATTCTTTTCCCTTCGC
R:
TCAAAGGGTGAAAGTTGACATCCA
Band lengths:
194-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]