GgaINT0112572 @ galGal3
Intron Retention
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79444606-79445667:-
Coord C1 exon
chr1:79445511-79445667
Coord A exon
chr1:79444659-79445510
Coord C2 exon
chr1:79444606-79444658
Length
852 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAAT
5' ss Score
1.79
3' ss Seq
CTTGTACTTTGTCTTTCCAGTGA
3' ss Score
8.78
Exon sequences
Seq C1 exon
ATTCCTCCTGTCACTTCTGTCTCACTGGCTTTCGTTTCCTTCACAGCCAAGGGCACAACATTTGACCTGAAAGAGCGGCGGTCAGTGATGATTTGGAACATGGAGAGCTTTGTCTTTGTGCAGACAGACAAACCCATATACAAGCCAGGACAGAGTG
Seq A exon
GTGAATATTTATTTAGTTTATAGCACTAGAACATTGTAGAAAACACTGACAGACTATTTCTTTCCAGAGGTCAGACAAATATCATAGTAGTTAGACTGGATCAGCTATATTTTAATTATGGATGAGTACTACCTTAATAAATAACATGAAGGAAAGAAATTGGTGTCACAAAGGTGGCCCACAAACACAGCCTGATTCTTCATCAGGTTATTTGGTTTTGAGGTGGGGGAGTAGATTAAATTAAATGCTGGAAACATAATGCTTTTTAAGGATATTTTTGAGGCATGTTTTTCATAATAAAGTAATTCATTATCTTCCTTTCAGTTTTCTCTAGTAAAGTAAAAAAAAATGTAAAATCCTGTAGAAGATGAGAACAAAGTGCACTAACAAGAATTAGACTGCATTAGCAAAACAACAACAACAACAAAACTGACAGTTTATCCTGTCACCAGCATATTTGAAGCTATCATATATGCAAAGCAACAAACTTCATTTTGAGGTGGTATAATAAAGAGGAATAAATTTGTCTACATAATGCAGCCAGCCACTAAATTAATTATGGTTCTCAGTTGAGAGTATGTGACCTGCATAGCAGTGCAGCCATCCCTTTGCTCTGAGGTTAAGCAAACTTTTGTGTAAAAGTATGAGAATACAATGCTGGGGGAAGTGCACTCTGCATAGTTTCCACAGAGTAGGATTCTTTTACCTCCAAATGCATTTTATTACCTACATCCTGTGCAAGTGAGATTGTTAGAAGAACAAATGAAACTGGAAGTGCTAACGAATGCAGAAACTCATGCTCAGCTAAATAAACTCTGGTTAATTCTAATGCCTTGTACTTTGTCTTTCCAG
Seq C2 exon
TGATGTTTCGTGTCGTTGCTCTGGATTTCAATTTTAAACCTGTTCAAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=30.2)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTGTCACTTCTGTCTCA
R:
ACAGGTTTAAAATTGAAATCCAGAGC
Band lengths:
198-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]