MmuINT0130093 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128523777-128524123:-
Coord C1 exon
chr6:128523970-128524123
Coord A exon
chr6:128523830-128523969
Coord C2 exon
chr6:128523777-128523829
Length
140 bp
Sequences
Splice sites
5' ss Seq
TAGGTATAA
5' ss Score
4.04
3' ss Seq
CAGAAAAATCTCTGTTTCAGTGA
3' ss Score
5.53
Exon sequences
Seq C1 exon
ATCTCAGGTTCACCTTTACCCTACACATTCATTACTGTGGAGATAAAAGGACCAACGCAGCGCTTCATAAAGAAGAAGTCAATACAAATAATAAAAGCTGAGAGCCCAGTCTTTGTCCAGACAGACAAACCCATATACAAACCAGGACAGATAG
Seq A exon
GTATAAAGAATTCACTGGGCAAAAACAACACAGTGGGTGAGGAGGGGTGGTGGTGTTCTTTACGATTAAACTGCAGTCATGGGAACTCTGGCCTTGGCTTCCCACTGTGGGGAGGTCTCACAGAAAAATCTCTGTTTCAG
Seq C2 exon
TGAAATTCCGAGTTGTTTCTGTGGACATCAGTTTTCGCCCGTTGAATGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=30.8)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGTTCACCTTTACCCT
R:
CGTTTCATTCAACGGGCGAAA
Band lengths:
206-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types