GgaINT0103736 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79383763-79384535:-
Coord C1 exon
chr1:79384379-79384535
Coord A exon
chr1:79383816-79384378
Coord C2 exon
chr1:79383763-79383815
Length
563 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTTCCATTACACTCCGCAGTTC
3' ss Score
5.84
Exon sequences
Seq C1 exon
CTTTCAGAATCCAACAGCACATCAGTGGCACTTCTCACTGTGACAGTGAAGGGAGAGACCCTGCAGTTCAGAAGCAGCAAGTCAGTGCTGGTCAAGAATTCTGAGAGTTTGGTCTTTGTCCAGACAGACAAACCTATCTACAAGCCTGGACAGACAG
Seq A exon
GTACAGAGAATTGGGTTGGTGTTAAGTCTAACAGCAGAAAATCTTCTGGACTTGATTCCCCAGAGGATTAATATTTTTATTAAAGAAGTTTTCAGAGCTCTTTTTTGGGGGAGTTAGAGCCAAAAGAAAATCTTACTTCAGTTAGCTGAGATCTAAGGCACATGGTACCATTGTTGTGTGTGCCCAGAGGATGGAGAATACAATATCTCAGTCAGAAGTAGGCACAGATTCACATTCCTCCATCTCAATTATAAGCACAAATCTGGGTTGACTTCAAAGCACTGCCTCCGTTGGCTGCATCTGACCCAACAGGGGAGAACAAGCACTTCCCACAGATAACTCATTCCAGCCAAGATCTGATTCTCCCTCTAAATTTGTCTGCCTTTCACCATCAGTAAGAAAGAGTAAGTGTAAATTAATTACTACTATAACTTAAGGATCTGATTTCACAGTCTGTTGATAAGTGAAATTAATCTGACTTAAAAATTATTGAAACATTGATATTTGCTGGTAGTGGTTATAAATATTAACAATTTCCTTATTTTTTCCATTACACTCCGCAG
Seq C2 exon
TTCTGTTTCGGATTGTCTCCCTGGATGAAGACTTCCACCCACTGAATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=30.2)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAATCCAACAGCACATCAGT
R:
TCTCATTCAGTGGGTGGAAGTCT
Band lengths:
206-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]