Special

MmuINT0103183 @ mm9

Intron Retention

Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67023879-67024168:+
Coord C1 exon
chr11:67023879-67023966
Coord A exon
chr11:67023967-67024050
Coord C2 exon
chr11:67024051-67024168
Length
84 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AAATGCATGTGTTCTTTCAGGTG
3' ss Score
9.5
Exon sequences
Seq C1 exon
GAGAATCTGAATAAGCTAATGACCAATCTGAGGAGCACTCACCCCCACTTTGTACGGTGCATCATCCCCAATGAAACCAAGACTCCTG
Seq A exon
GTAAGACACTTCTGTCATCTATCCAGACAGGCCCCAGTGTGTTTGTCTCAGAGTCTAGACCAGGAAATGCATGTGTTCTTTCAG
Seq C2 exon
GTGCCATGGAGCACGAACTGGTCCTGCACCAGCTGAGGTGTAACGGGGTGCTGGAGGGCATCCGCATCTGCAGGAAGGGCTTCCCCAGCAGGATCCTCTATGCAGACTTCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006316=Myosin_head=FE(4.2=100)

							
A:
NA

							
C2:
PF0006316=Myosin_head=FE(5.7=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000018637





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000075147, ENSMUSP00000117569, ENSMUSP00000131057
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:10409247-10409328 
HsaINT0107428
(MYH1)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:30124266-30124345 
Chicken
(galGal4)
chr18:442116-442197 
Chicken
(galGal3)
chr18:491105-491174 
GgaINT0128373
(Q90900_CHICK)
Zebrafish
(danRer10)
chr22:288931-289009 
ALTERNATIVE
DreINT0176180
(wu:fd14a01)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGACCAATCTGAGGAGCACTC

				
R: 
TGCATAGAGGATCCTGCTGGG

				
Band lengths: 
173-257

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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