HsaINT0107428 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10409129-10409416:-
Coord C1 exon
chr17:10409329-10409416
Coord A exon
chr17:10409247-10409328
Coord C2 exon
chr17:10409129-10409246
Length
82 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ATGTGGATTCATTCTTTTAGGTG
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAGAATTTGAATAAGCTGATGACCAACTTGAGGAGCACTCACCCCCACTTTGTGCGGTGCATCATCCCCAATGAAACTAAAACTCCTG
Seq A exon
GTAAGACATTTCTGATATCCAGACAAGCTCCAGTGTGTGTGTGATAGACCACGAAGTATGGCATGTGGATTCATTCTTTTAG
Seq C2 exon
GTGCCATGGAGCATGAGCTTGTCCTGCATCAGCTGAGGTGTAACGGTGTGCTGGAAGGCATCCGCATCTGCAGGAAAGGCTTCCCAAGCAGAATCCTTTATGCAGACTTCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAACTTGAGGAGCACTC
R:
TGCATAAAGGATTCTGCTTGGGA
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)