MmuINT0103413 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:66990855-66991876:+
Coord C1 exon
chr11:66990855-66990953
Coord A exon
chr11:66990954-66991772
Coord C2 exon
chr11:66991773-66991876
Length
819 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
GCTCTCTTCCATGTACTTAGAAA
3' ss Score
6.14
Exon sequences
Seq C1 exon
ATCTGCTAGAGAAGTCCCGGGTCACTTTCCAGCTTAAGGCGGAAAGAAGCTACCATATATTTTATCAGATCACATCCAACAAGAAGCCAGAGCTGATCG
Seq A exon
GTAAGGGGTGCCGTAACTCCTCTCCAAAGTTCCCCCCTCCCCCACACTAGTCACCACACCAGCCAGGGTATTGCCCAACCTGACGCACCATGTCTAAATTCTGTCAAGCCTTTTTTTTTTTTAAATGGGAAATGAAAGAAGCTTTTCAGGAGTAATTGTGGGAAATCTTTGTAAGTTTGTTAAAATTTATATTTGCTTATTATAAAGATTCTTAAGAAATCAAAGGAAAAGTGAAAAACTATCTCCAATTTCTACTATGAAATAACCATTATGAACACCTACATAAACATCTCATTGGTGACTCAAGGTGACTTCAATGGGTATATTGTTACATAATGATAAATGCATACAATTTACCCGGTTGGAGTAATAGTCACACTTTTATAATTTATATATATTTACTGAGTGTGTCACAGTTTCATCCATATTAATGTGGCTGCATGGTGTTGTGGTTGGTTGCATAGTGTTCCACACTAGAGGTAGGCAATTTTTACTTAATCATATTCTTTCCCCTTTAAGGTTTCAATTTGCTTCCATTTCTGATTTTAAAATAGCTACTACAATAAAGACTATGGTAGTATGTGGTCAACTTTCCATCATTCTTTGAAAGTCTCACACATGCATACCATTTGTTAATGATCATGGTGATGTTTAAAAACTAGTCAATGACAGGGAACACCATGCTGTCATCTTCAAGGTAGTTAGCACCCGTCAGTCTTTCCCCAGGTATCAAGTAGTTACCTTAGAATCGGTCTGGAAGTCTCTTGGTTTGATGAAGACATAGACTATGTTCCTCTTTGCTCTCTTCCATGTACTTAG
Seq C2 exon
AAATGCTGCTGATCACCACGAACCCATATGATTACCCATTTGTCAGCCAGGGGGAGATCAGTGTGGCCAGCATTGATGACCAGGAAGAGCTGATGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTAGAGAAGTCCCGGG
R:
ATCAGTGGCCATCAGCTCTTC
Band lengths:
203-1022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: