GgaINT0128365 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:495802-496105:-
Coord C1 exon
chr18:496007-496105
Coord A exon
chr18:495906-496006
Coord C2 exon
chr18:495802-495905
Length
101 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
TTCCCTCTTCTTACTTTCAGACA
3' ss Score
10.48
Exon sequences
Seq C1 exon
ATCTATTGGAGAAGTCTAGAGTCACTTTTCAGCTGAAGGCAGAAAGAAGCTACCACATATTTTATCAAATTATGTCCAACAAGAAACCAGAGCTAATTG
Seq A exon
GTAGGAATGATGACTAACTTGGAGAAGATTGCTGAGCATCAGCTCATGCTATTACATACTTGACTGAACTAAACCTAATTGTTCCCTCTTCTTACTTTCAG
Seq C2 exon
ACATGCTTCTAATTACCACCAATCCATACGACTATCACTTTGTGAGTCAAGGTGAGATCACTGTTCCCAGCATTAATGATCAAGAGGAGCTGATGGCTACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATTGGAGAAGTCTAGAGTCACT
R:
GCCATCAGCTCCTCTTGATCA
Band lengths:
195-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]