RnoINT0096300 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53718051-53718971:+
Coord C1 exon
chr10:53718051-53718149
Coord A exon
chr10:53718150-53718867
Coord C2 exon
chr10:53718868-53718971
Length
718 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
GCCCTCGTCCATGTATTTAGAAA
3' ss Score
5.7
Exon sequences
Seq C1 exon
ATCTGCTAGAGAAGTCCCGGGTCACTTTCCAGCTTAAGGCGGAAAGGAGCTACCATATATTTTATCAAATCACATCCAACAAGAAGCCAGAGCTGATCG
Seq A exon
GTAAGGGATGTCATAGTTCCTCTCCAAAGTCACCACCCCACACAAGTCACCACACCAGCCAGGGCATTGCGCCACCTGACGCACCATGTCTAAATTCTGTCGGGATTTTTTTAAAATGGAAAATAAAAAAGCTTTTCAGGAGTAAATTGTAGCTCTCTGAGCTGAGCTCAAGTTCAATCCAGAAAAAGAAAAGCTTTGTATATTGTTACATATAGATAAATGCATACAATTTATCCAGTTGGAGTAACGGCCACACTTTTATAACATACATACATATACATATATACATACATATATATATATTTACTGAGTATGTCATGGTTTTATTCAAATTAATATTGCTGTATGGTGTTGTGGATGGTTGCACAGTGTCTCACATTAGAGATAGGCAAATTTTACTTAATTATATCCTTTCCCCTTTAATTTGCTTCCATTTCTGATTTTTAAATAGTCACTACAGTAAAGACTATGGTAATAGGAGGCAACCTTTTCTTTATTCTTAGAAAATTTCACACGTGCATACCATTTGTTATATCGTGGTTTAAACAAAATTTTAAAGGTAGTCAAGAACAGAGAACACCACGCCATCATGTTCTAGATAACTAGCGCCCATCCGTCTTTGGCTCATGTATCAAGTGACCTTAGAATCGGTCTGGAAATCTCTTGCTTTGATGAAGGCATTGACTATGCTCATCTGTGCCCTCGTCCATGTATTTAG
Seq C2 exon
AAATGCTGCTGATCACCACAAACCCATACGATTACCCATTCGTCAGTCAAGGGGAGATCAGTGTGGCCAGCATTGATGACCAGGAAGAACTGATGGCCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTAGAGAAGTCCCGGG
R:
GTGGCCATCAGTTCTTCCTGG
Band lengths:
199-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]