MmuINT0103430 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67002651-67003210:+
Coord C1 exon
chr11:67002651-67002741
Coord A exon
chr11:67002742-67002820
Coord C2 exon
chr11:67002821-67003210
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GTCTTTTCCACCACCTCCAGGCC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GAAAGAGTTTGAAATGAGCAATCTGCAGAGCAAGATTGAGGACGAGCAGGCCATCGGCATTCAGCTGCAGAAGAAGATCAAGGAGTTGCAG
Seq A exon
GTACATCCATAGCTTCTATCCGTCTAATTCATCATTAAAGGACCCAAGAAGCTGAGTCGGTCTTTTCCACCACCTCCAG
Seq C2 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGCGGAGCCACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACGCTGCAGCATGAAGCCACAGCAGCCACCCTGAGGAAGAAGCATGCGGACAGCGTGGCCGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGATGAAGATGGAGATCGATGATCTTGCCAGTAATGTAGAGACAGTGTCTAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.908
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(4.1=100),PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(5.8=100)
A:
NA
C2:
PF0003816=Filament=FE(45.1=100),PF0157614=Myosin_tail_1=FE(50.0=100),PF045827=Reo_sigmaC=PU(29.8=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCAAGATTGAGGACG
R:
CTCTCGCTGATCTCCTCCAGT
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: