HsaINT0107699 @ hg38
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10528690-10529252:-
Coord C1 exon
chr17:10529162-10529252
Coord A exon
chr17:10529080-10529161
Coord C2 exon
chr17:10528690-10529079
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTATTTTCCACCATTCCCAGGCC
3' ss Score
7.11
Exon sequences
Seq C1 exon
GAAAGAGTTTGAAATCAGCAATCTGCAAAGCAAGATTGAAGATGAACAGGCACTTGGCATTCAATTGCAGAAGAAAATTAAAGAATTGCAA
Seq A exon
GTAAGTACATGATTTTCATCAGTCTGGCTCGGAGGCAGTTATGACACAAAGAAGCTGAGTTTGTATTTTCCACCATTCCCAG
Seq C2 exon
GCCCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCCGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAGCTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGTGGGGCCACTTCAGCCCAGATTGAGATGAACAAGAAGCGGGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTACAGCATGAAGCCACAGCGGCCACCCTGAGGAAGAAGCATGCAGATAGTGTGGCCGAGCTTGGGGAGCAGATTGACAACCTGCAGCGAGTGAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGGAGATTGATGACCTTGCTAGTAATGTAGAAACGGTCTCCAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414:ENST00000245503:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.892
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGAACAGGCACTTGGC
R:
GCCTCTCGCTGATCTCCTCC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development