RnoINT0096281 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53729673-53730168:+
Coord C1 exon
chr10:53729673-53729763
Coord A exon
chr10:53729764-53729850
Coord C2 exon
chr10:53729851-53730168
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTCCTTTCCACCATCCCCAGGCT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GAAAGAGTTTGAAATGAGCAACCTGCAGAGCAAGATCGAGGATGAGCAGGCCATCGGCATTCAACTGCAGAAGAAGATCAAGGAGTTGCAG
Seq A exon
GTAAGTCCATGGCTTCCACGAGTCTAACTCATCAGGGGAAAAATGACTGACCCAAGAAGCTGACTCAGTCCTTTCCACCATCCCCAG
Seq C2 exon
GCTCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGCGGCTGGAAGAAGCCGGCGGGGCCACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAGGCCGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAAGCCACAGCAGCCACCCTGAGGAAGAAGCACGCGGACAGCGTGGCTGAGCTCGGGGAGCAGATTAATGTAGAGACAGTGTCTAAGGCCAAGGTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.783
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATCGAGGATGAGCAGGC
R:
TCGCTGATCTCCTCCAGTTCC
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]