MmuINT0103439 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67006720-67007316:+
Coord C1 exon
chr11:67006720-67007028
Coord A exon
chr11:67007029-67007112
Coord C2 exon
chr11:67007113-67007316
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AATGATGGTTCATTACACAGGAC
3' ss Score
5.9
Exon sequences
Seq C1 exon
GCATCTCTGGAGCACGAGGAGGGAAAGATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTAGAGTCGTGGAGTCCATGCAGAGCACGCTGGATGCCGAGATCAGGAGCAGGAACGACGCCATCAGAATCAAGAAGAAGATGGAGGGAGACCTGAACGAGATGGAAATCCAGCTGAACCACTCCAACCGCATGGCTGCCGAGGCCCTGAGAAACTACAGGAACACACAAGGCATCCTCAAG
Seq A exon
GTAGGTGGCACCAAGGGACGGTCTCAGATGAGCGGTGTGAACCAGTCTGTGGACACAGTGTCTCAATGATGGTTCATTACACAG
Seq C2 exon
GACACCCAGTTGCACCTGGACGATGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATGGTTGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATCGAGGAGCTGCGGGCCACGCTGGAGCAGACGGAGAGGAGCAGGAAGATTGCAGAGCAGGAGCTGCTGGACGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.353
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(3.4=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=FE(8.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAACACACAAGGCATCC
R:
ATCTTCCTGCTCCTCTCCGTC
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: