GgaINT0128389 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:484542-485206:-
Coord C1 exon
chr18:484898-485206
Coord A exon
chr18:484746-484897
Coord C2 exon
chr18:484542-484745
Length
152 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
ATCTCGTTCCTGTTTTACAGGAT
3' ss Score
10.94
Exon sequences
Seq C1 exon
GCCTCCCTGGAACATGAAGAGGGGAAGATCCTGCGCCTCCAACTGGAGCTCAACCAGGTCAAGTCTGAGATTGACAGGAAAATAGCAGAGAAAGATGAGGAAATTGACCAGCTGAAGAGAAATCACCTCAGAATTGTGGAGTCCATGCAGAGCACTCTGGATGCTGAGATCAGGAGCAGGAATGAAGCCCTTAGACTGAAGAAGAAGATGGAGGGAGACCTGAATGAAATGGAGATCCAGCTCAACCATGCCAACCGCGTGGCTGCAGAGGCACAAAAGAACCTTAGAAACACACAAGGAGTGCTCAAA
Seq A exon
GTATGTTAAGCTAAGTATGTGCATGTAGCTATTTGTCCTGCATGGCATTATACTGATATAATAATTAATTATCTAAACTATTACAGAATAGCAGTAACTACTATTGTCCGACATTCTCTGCCATGTTATAATATCTCGTTCCTGTTTTACAG
Seq C2 exon
GATACCCAGATACACTTGGATGATGCTCTCAGGACACAGGAGGACCTGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAGCAAACCTGTTGCAGGCTGAGATTGAGGAGCTACGGGCAGCCCTGGAACAGACAGAGCGCTCGAGAAAAGTGGCTGAGCAGGAATTGATGGATGCAAGTGAGAGAGTTCAGCTCCTCCACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.544
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.8=100),PF0003816=Filament=PD(11.8=34.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGCTCAACCATGCCAA
R:
CCATCAATTCCTGCTCAGCCA
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]