RnoINT0096290 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53733727-53734323:+
Coord C1 exon
chr10:53733727-53734035
Coord A exon
chr10:53734036-53734119
Coord C2 exon
chr10:53734120-53734323
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AATGATTGTTCACTGCACAGGAC
3' ss Score
6.04
Exon sequences
Seq C1 exon
GCATCTCTGGAGCACGAGGAGGGAAAGATCCTGCGCATCCAGCTGGAGCTGAACCAAGTCAAGTCTGAGATCGACAGGAAGATTGCTGAGAAGGATGAGGAGATCGACCAGCTGAAGAGAAACCACATTCGAGTCGTGGAGTCCATGCAAAGCACGCTGGACGCCGAGATCAGGAGCAGGAACGACGCCATCAGGATCAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTGAACCACGCCAACCGCATGGCTGCTGAGGCCCTGAGAAACTACAGGAACACCCAAGGCATCCTCAAG
Seq A exon
GTAGGTGGCACCAAGAGGTGATCCCCGATGAGTGCTGTGACACGGACTGAGGACACAGTGTCTCAATGATTGTTCACTGCACAG
Seq C2 exon
GACACCCAGCTGCACCTGGATGACGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATGGTGGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATCGAGGAGCTGCGGGCCACTCTGGAGCAGACTGAGAGGAGCAGGAAGATTGCAGAGCAGGAACTGCTGGACGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.338
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGGAACACCCAAGGCA
R:
CCTCTCAGTCTGCTCCAGAGT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]