MmuINT0103542 @ mm10
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54952954-54953531:-
Coord C1 exon
chr14:54953289-54953531
Coord A exon
chr14:54953131-54953288
Coord C2 exon
chr14:54952954-54953130
Length
158 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTTTATTCTTCTTTGGCAGGTT
3' ss Score
10.15
Exon sequences
Seq C1 exon
GAACAAGACAACCTCAATGATGCAGAGGAGCGCTGTGACCAGCTGATCAAGAACAAGATCCAGCTGGAGGCCAAGGTGAAGGAGATGACCGAGAGGCTGGAGGACGAGGAGGAGATGAACGCCGAGCTCACTGCCAAGAAGCGCAAGCTGGAAGATGAGTGCTCAGAGCTCAAGAAGGATATTGATGACCTGGAGCTGACGCTGGCCAAGGTGGAAAAGGAAAAGCATGCAACAGAGAACAAG
Seq A exon
GTGAGGCCGGTTCCCTCGGGTTCAGCCTAGGTCTCCAGAAGATTTCCAGACCAGAGTATCGGCCTAGTTGGTAGCATCTATACATGTCTCCACAATGACATCCTTTGATCCTAAAGGCAAGGTGGATTTATTTATTTATTTTTATTCTTCTTTGGCAG
Seq C2 exon
GTTAAAAACCTAACAGAGGAGATGGCTGGGCTGGATGAAATCATTGCCAAGCTGACCAAAGAGAAGAAAGCTCTGCAAGAAGCCCACCAGCAAGCCCTCGATGACCTGCAGGCTGAAGAAGACAAGGTCAACACGCTGACCAAGTCCAAAGTCAAGCTGGAGCAGCAGGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752:ENSMUST00000081857:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.525
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(42.3=100),PF0157614=Myosin_tail_1=PU(8.3=11.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(28.0=89.8),PF0157614=Myosin_tail_1=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCTGGAAGATGAGTGCT
R:
CTTTGGACTTGGTCAGCGTGT
Band lengths:
252-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types