GgaINT0129362 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:390948-391530:-
Coord C1 exon
chr18:391288-391530
Coord A exon
chr18:391125-391287
Coord C2 exon
chr18:390948-391124
Length
163 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTGCTCCCTTCTTATCAAAGGTG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GAAGCAGATGCCTTAGCTGATGCTGAGGAAAGGTGTGACCAGCTCATCAAAACCAAAATCCAGCTGGAAGCCAAAATTAAGGAGGTGACAGAACGGGCTGAGGATGAGGAGGAAATTAATGCTGAACTGACGGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAGCTGAAGAAAGACATAGATGACCTGGAGTTAACACTGGCCAAAGTTGAGAAGGAAAAGCATGCCACTGAAAACAAG
Seq A exon
GTATGAGGCAGAAGATGTCACTCACACTCCAATAAAGAACATTGTGCTTTTGGAAACACAGAATGTCTTGAGTTGGAAAAGACTCAAGAGAGTTGTAAGTCCAAATGTTACAGGAGTCTTGAATCTACCTGCTTTAATTATACTTGCTCCCTTCTTATCAAAG
Seq C2 exon
GTGAAAAACCTCACAGAGGAGATGGCAGCCTTGGACGAGAACATTGCCAAGCTGACAAAAGAGAAGAAAGCCCTCCAAGAGGCCCATCAGCAGACACTGGATGACCTGCAGGCTGAAGAGGACAAAGTCAATACGCTGACCAAAGCTAAAACAAAGCTGGAGCAGCAAGTGGACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.898
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(40.6=100),PF135141=AAA_27=FE(10.7=100),PF0157614=Myosin_tail_1=PU(29.5=48.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.4=100),PF135141=AAA_27=FE(7.8=100),PF0157614=Myosin_tail_1=FE(43.9=100),PF0003816=Filament=PU(9.5=47.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGAGGATGAGGAGGAAA
R:
AGGTCATCCAGTGTCTGCTGA
Band lengths:
256-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]