BtaINT0097290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30089985-30090718:-
Coord C1 exon
chr19:30090476-30090718
Coord A exon
chr19:30090162-30090475
Coord C2 exon
chr19:30089985-30090161
Length
314 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TAATTTGTTTAACTCTAAAGGTG
3' ss Score
5.55
Exon sequences
Seq C1 exon
GAAGCAGATGGCTTGGCTGATGCAGAGGAAAGGTGTGACCAGTTGATTAAAACCAAAATCCAACTTGAGGCAAAAATCAAAGAGCTAACTGAGAGAGCAGAGGATGAGGAAGAGATTAATGCTGAGTTGACGGCCAAGAAGAGGAAACTGGAGGACGAATGTTCGGAACTGAAGAAAGACATAGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAACACGCCACAGAAAATAAG
Seq A exon
GTACAAATCATGACCCATTTTAAAGTGTTTACAAGTGTGAGCTTGTTACTGATATATTTTAACTGCATATTTAATCGTGAAATTATTGAATATGAAAAGATAATATTGTTATAATTATGTCATCTCTTTAGTCTTCATCATTTTTATCCATTTACCTTGACCTTTATCTCCCATATTTTTCAGCTACATAGGCCTGGGTTAACTTTCAGTTTCCATTTTTCATCTCAGGTTGACATTATTCTAAAATATTACTGTGTTTCTCATCAAGACAACAGAATGTCACTAATATTCCTGTAATTTGTTTAACTCTAAAG
Seq C2 exon
GTGAAAAACCTCACAGAAGAGATGGCAGGCCTTGATGAAAACATTGCAAAGCTGACCAAGGAGAAGAAGGCCCTTCAGGAGGCCCACCAGCAGACCCTGGATGACTTGCAGGCAGAAGAGGACAAAGTCAACACCCTGACCAAATCTAAAACCAAGCTAGAACAGCAAGTGGAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.983
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(29.6=49.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(43.0=100),PF087025=Fib_alpha=PU(14.5=28.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGAAAGGTGTGACCAG
R:
GTCCTCTTCTGCCTGCAAGTC
Band lengths:
345-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development