MmuINT0103505 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67065208-67065860:+
Coord C1 exon
chr11:67065208-67065450
Coord A exon
chr11:67065451-67065683
Coord C2 exon
chr11:67065684-67065860
Length
233 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TCATCTGTCCAAATCTAAAGGTG
3' ss Score
6.25
Exon sequences
Seq C1 exon
GAAGCAGATGGCTTGGCTGATGCTGAGGAAAGGTGCGACCAGCTGATCAAAACCAAAATCCAGCTGGAGGCCAAAATCAAAGAGCTGACCGAGAGGGCCGAGGACGAGGAGGAGATCAACGCGGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCAGAGCTGAAGAAGGACATTGACGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACGGAGAACAAG
Seq A exon
GTACAACCACTATTCACTTTCAAGCATTTACAAATACTCAAGCCTGACTCTTAAACCTTAAAATCATGGAACGTGAAAGGGAAAATGTTACAATGTTGCCATCTTTTTTATGGCTGCTGTATTCCCTGTCAGGATGTTGTCCTGAGAAGTTAAATTATCATGTATTTTGGCAAGATGACATGTTTTTTTTTTTTTTTTTAATCAACATTCCCATCATCTGTCCAAATCTAAAG
Seq C2 exon
GTGAAAAACCTGACAGAAGAGATGGCAGGCCTGGATGAAAATATCGCCAAGCTGACCAAGGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAGGAGGACAAAGTCAACACCCTGACCAAAGCCAAAACCAAGCTGGAACAGCAAGTGGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.983
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.5=100),PF0157614=Myosin_tail_1=PU(29.1=48.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(28.5=93.2),PF0157614=Myosin_tail_1=FE(43.3=100),PF087025=Fib_alpha=PU(15.5=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGAGGAGGAGATCAACG
R:
TGTTCCAGCTTGGTTTTGGCT
Band lengths:
307-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: