MmuINT0104384 @ mm10
Intron Retention
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70096298-70105481:+
Coord C1 exon
chr2:70096298-70096495
Coord A exon
chr2:70096496-70105376
Coord C2 exon
chr2:70105377-70105481
Length
8881 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GTCCTGCACTACCTCTCCAGCTG
3' ss Score
6.91
Exon sequences
Seq C1 exon
TGTCTGTGCCTTTCCTCACACACTAGTCTTAATCAAACATAAACTTTTCTAAACTCTGTTTAGGATATGGATGAGGAGATTGAGGCTGAATACAACATTCTGCAGTTTCTCCCCAGCCATCCCAACGTTGTAAAGTTTTATGGGATGTTTTACAAAGCCGATCGCTGTGTGGGAGGACAGCTATGGCTGGTTCTGGAG
Seq A exon
GTAAGAGGCTCCGGTGGGGTAGCTGTGGATTGGAAGCGCGTTTGCAGGTGCAGGTTGGAGAAGTCCGTTCCTCCTTAATGCCAGATAACAGAAGAGACAGGAAACCCTGCAGTGCTTACAGCAAGGTGTGAACCGGGTTTCTTGTTTCTAAGCTTTGGAAAAGAACGTAATCCTCTTTTCTCCTACCGCAGAGTCTATCTAGGAATCTGATTGGAAAATGTTACTGTGTTCTGTAAACTGGAAACATGTCACAGAGCTCACGTTCCAACTCGGTACAGTCCCTTTCTGAACTCTGCCTGCAATGCTGTTGGCCTGAGCCATTTGTATTTGCCTGTTCATGCTCATGGTCTCCTGAAAACTGAGTCTGAGAGTTATGTGTAGAAAGACCAGCTGAGAGAGAAGAGAGGAAGACATCGGGGTAAGGAGACATTACAGAGCACTGATCACGGCCTCAGCCAACTCTCTACAGAAATGGCTATCCAGGAGCCTGTCCACCATTGTTCTCATCTGTACCTCTGCCCTCCAGGAAGGCAGTCTCCTATAGAGGAGGGGACAATTCCTAGTACCTAGGTACCTGGGAAGAGGGGGCATAGAATCTCCCAGCAGCATCTGTTTTGCAGAGGGGATGTAAAGAGAACACAATGTGTACACAGTTGTCCCATTTTTCCTCCTTTATTAATGGGGATGAATGTCATCTGGGTGCAGAAGACGGAGTCCCCTGAACTGAGAGTGAGGATAACAGGGACAGTCGGACTGGTCATTTGCTCCATTCTCACAGGACACCCACCCCCCAATTCGTCTTGGACCTAGACCCTCTGAATCGGTTCACACTTCCCTGCCTGTGTCATCAGAATGATGCAGGGGCATGACAGGAACATGAGGACACATGCAGACACCTTATGCCAGTCTTCTTGTATCTGGGAAAGTCTGAGAATGAGACAGTATGTATCGGCTGCCATGGCAACCGTGGGAGGAAGATAGTCTCGATATTTCTGTCATATTAGCTGTCTTCCTCACAATCTCTCAGTGCAGGGAATTTTGATTTTTATGAATCGTCTTTGAAATATTAATTGTCAAGTGAAATCATCCATGTATTCTCCCGGCATCTTTGGGGTTCATTAACCCCCTACCTCCCCCTTCCCTCTGCCCATGAGGATGTTAGGGTTTTACTTGCTGCGAAGCTGCTTAACACTGATACCTTGTTCAGGAATGGCATGGCGTCTGGAGGCTCTGGTTGTAGTCATCTTTAGCCCTGTAACAGCTCTGTCCCTCCTTGTAGCATCATCATGGAAGTACAGTGACCAACGAACGCCCCTTTTATTCATCCCCTTCTCTGTACCTCTCATCCCACCCCAAACATCTCCGTGTTCAGACAAAGGGGATTTAACCCTTTCAGGAACTCTCTGAGGCTTGCCAAAGGTGTGCTCTGTGTGCTGCCTGGCGAGCAGGAGGCTGCTTATGTCAAAGGTGCTTATGAGCCAGTGATCTTCCCAATGAGGTGGGATGGTAGATGCTCCAGACAGTCAGATTCAGCACCTCAGGTGCGCTCCAGACAGCCAGGGGAGCTGTGAATAACAAGGAGTCAGGCTGTTACTGGAGCCTCGTGCTGATGCTTTTTAGCCAAGTACCCCCTTGCTATTTCCCATTGGCCAGGGGACAGGTAACAAGGCCACTCAGAGACACTGGGTGACTTATCCTTCAGTATGTAACATGCTGACATTTACCATTTTGATGGTGGTTTTGCCAAAGCTGGTAGCATGGAATGCCACCTTCTATGTCCCAGCATGGGTTGTTTATAGCAAGCTGCTGGGTAGCTGGATGTGACCAGTGCCTCCACAAGTCTCCCAGAAACACAAGGATAGACTTCTAACAGTGGTAGAAGTGCTCAGCTCTCTTTAGCTTCAGTCTCTTGGCATTCCACGGATGGTCAGAGGGCCAGGGAGGAGAGCAGCATGCTCCCGTGACCATGGCACACTTGGACTATGTGTGCCAGTCAGCTTTCTGTTACTATAACAAAATGCTCGAGGTAAACCAATTTTAAAAAGGAAATGCCTCTTTGGCTCGTGGTTTTCAATCCTCTGATCAGTTGGCTTCGGGGTGCAAGTGAAGAGGTAGTGTACATCATTATGGGCACAGACCAAAGAGGAAGTGGTCCACCTCATGGTGGCTTGGAAGCAAAATGGGGAGCAAAAAAAGAGACCAGCATCCAACCCCCCCCCCCCCCACTGATGACTTGACTTCCTCCCACCGGGCCTTACACACTAAAAGGGTCACTGCCTCCCAATAGCACCATGTGCTGGTGGTCAGCCTGTTAGCACACGATCTTTGGGGACACTAAGCAGGATGGCACCACCCCAGCCTACTCACAGGACAGATGACAGCAGGCCATGGTGTACCCCCACAGTTCTCTCCATCTGTGGCTTTTAAAGGTCTGCCTTTTGAGACTCCCAGTCACTATAATTATGGTGTATGTAGTGTTGTTCTCCCTGCCCTTTGCGTTGAGATCATTTATGTTGCCTCCGCTCTTGGCCTGCTGGATGTGATGAAAGGACCAGAGAGGAGCTATTTCATGGAGCAATTTTAGAGGATAGAAAAAGGTTATTAATAAGCTCCTCAAATCACCACAGCTCTGAAAACAAAAGCAAATAAAAATGTCAGCTCTGAAATTCATTACCAATTTGTTAGTCAAAAGCAAACAAAACTCCCTTCATGGTAGACACCTATACATCAGGAAGGCATGGAGCGAGAATACTCCATGATGTGTGGGGCAGGGTGCATTTGTTTTAAGTCAGTATTAAATTAAAAAAAAATCTGTAAGTCCCATTGTCTCTTACCCAAATAAGACATGATAAGGAATTAGATCTTTGAGAGCAGCACAGCACTTGGAAATGGCATCTAATGCCACTAAGGCACACTTTCTTTTTCTCCTTTTAGGACAAAAACCTTGATAGGTAGAGACTAATCATTTCAGCATGAACCAAATGCTCAACTTTTGAAAAACCATTTAGAGTACCATGAAAAAGGCTGCAAAGAAAAAAAAATCAAAGTAAAAAAAAAAAAACCTTTGCTTTTAAATTAAGTTAAATAATTGGCTTTAAAAATGATCTCTTCCTCTGCCCTGTCTAGAGATCAAAGTACAAGTTCAGAGCCAAAGCAAGAGAGGAAGAAGAAAGGAAGGGAGGGGGAGCGAGAGTGAAGGCTGAGAGTGCCTACATTCTAGTTAGCTCTTGCTTTTATTCAGGCCCTAGAAGTCCAGTCTAGTCCCAAACACCACCGGAAGTGTTAAGTAGCAAGCCACTTTTACACACTGACACTGCGGCATGAGTTGAGTTTATACAATTGAGGTTCTAGTGGGGGGCGGGGGGTTGGTGGGATGGCGTATGTCCTAAGTGCTAAATGCTGTAACAGCGCTGGAGAGTCTAGAATGCAATGAAGGAAGACAGCAAATGTCTGACAGGACAAGGGAAGAGCTTTTGAAAGGCAGAGCAGCATCTATAGGCTCATGCTAGCTGTGTTCAGCACAAGAGAATTAAGAAACGGCTGGCTGGAGTAATCCTTCCCACCAGTCACCACACTGACAATGGAGCTGGGAGCCTCCAGTCCAAACACGTCTCAGCCACTGAGCATCTATCTCCCTTCTGGAAATGCTCCTGGGTCCCAAGGGGCATGGCTTTCATTTGTGTAGTTCTAAGTCAGAAACACAACTTGGTGTTCAGTAAAATCAAGATTATCTGTCTCAACTTACGTGGAAAACTGAGCTGTTTTGGGCTACCAAGAGGCAGACACGATGCTATGACATCTTTATGCTCTTGAAGAACCTTACAGCCTTGGAAGACTGATCACAAGGCACTGCAGAGAAATTCCCCTTAATTCTGCTATCTCACGGAGTCAAATCAACACCGTGGTATAGGAGAGACTTGACAGTTGGAGCTGAGGCTTAGAACAGAGGTCTGGCGACCGTGTTGCCTGGACCATTTTGTAAGAACTCAGAGGAAAGTGGATGGCTTACTGAGCGAGGAACATTTTATTGCTTGAAGTTATGACTGTCCTGACAAACGCACACGCTGTGATTGAGTCAATATTCAGTGAGGTTTTGAAAATGAGACAGGGAAGGCAAATGACATTTTTCTGTTTTTCTTAGTTTGCAGCAAAATGCTCATTAAATTCTAGGTGCATCCGGCTGCTTTGTTTCCTGAAGGGATAGGGAGGAACCGTGGGCTGGAGAGACACCTCAGTATTTGAAACTGATGGCTGGCAGAACGTGTGGGAAGGGCAGGCTTTCGTGCTAACCCTCAGGGCTTGGGCAGGAGACTCAGGTGCCTTTGACAACTCTAAGGGTTATTTGACACAGTTGAATATTATTTTTTTTGTTTTATTTTTAAAAGGCTCAGCCCATTTCACTGCACATTGACTCTTGTAAGTATATACCTTTCATATCTAAGTTACCACAGTCTTTTTCTGTACCCCACAGGCTGCCCTTTTAAAACCTTGCTAGTAGGCTTATCAACAACACAGGACAGCTTCCCTTTGAGGTATCCTGAACAGTTTAATTACATTTCTGTGAATTCTGGAAAGTCAGACAGCTCTTAACTCTGACATTTACTGAACAAAAGGCACCAGCTGAGTAAGACCTCTTTGGGTTTTGTTTTGTTTTTCTAAATTCACAGCTGAGTTTTGATCCCACTGACAAATAGCTACCTTTAATCCCTTCCTAAGTTCTGAAGTGATGAAGAAAGCTTCCAAATTTGCTTCTTTAATGAAACATGCTGAAGATGTCCTTGTCAAACAGTTGGTCGGGAAGGGAAGAAACTCCCAAGAGTCTTCAGGGGGAAATTTCTAGCATCACATTAGTTTGGGTCAACACCCAGCATTTAAATGTCCTCTTGGTAGTATTTCAGCATTCCCCTCCAACAGGAGAAAGCATATGTGCCCTTGAGATGGGAGCCCAGCTGGGGAGTAACCCTGATGGACCTGCTCTTGGGCTTTGCATCCAGAGATGCAGAGAACTTACCAGGTACTTTCATCTTCTATCCATCGACTGTCTTCACCATCCACACAGAGGCGCTGAGAAACCTATTTTGATTCTATTTCCTAGGTATTTCATGTCTTGACTTTGGTCCCGGACTCCCTTGGTTGCTGCTGCTGTTTGTGTATGTGGTATATCTGTGAACCCCAGTTCATGTGTGTGCATGTGTGCATTTGTGCGCACTTGTGTTTGGAAGTTAGAGGTCAATACATTTCTCTCTATATATATATCTTTTTTTTTTGGTTTTTTCGAGACAGGGTTTTTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTACCTGCCTCTGCCTACCGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCTTTTTTTTTTTTTTTAATGTTTACCATTTTTTTTATGATTTATTTATTTATTTTATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCAACAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTAACCACTGAGCCATCTCACCAGCCCTAATACATTTCTCAGTAGCTCTTTATCTTATTCTTTCAGACAGAATCTCTCACTAAACCCAGAGCTTACCAGTTCAGGAAGATTGTGTGGCCAGAAAGCTCTAGGGATCCACTTGCCTCTGATCTCCCCAATGCTGGGATCACAGATACTAACTGCTACTTGGCTTTTAATGTGAGTGATGCCAACCTGAACCTAGGCCCTCATGCTTGCATGACAAGAACTTTATAAACTGTACTGACTAATTTGATGCCGACTTGACAGAAGCTAGAGTTAACATAGAGGAGGGAGCCTTAGCTGAGAAAAGATTGGACTGTAGACATGGCTATAGTATATTTTCTTAATTAGTTACTGGTAGGAGAGGGCCCCATTGGTAATGGGTGGTGCCAACCCTGGTTTGGGTGGTCCTGGGTTCTATAAGAAAGCAGGCTGAGCAGGCCATGAAGAGCAAGCCGGTAAGCAGCATCCCTCCATGGTCTCTGCTTCAGCTTCGCCTCCAGATCCCTGTTAGAGTTCCTGCCCCGACTTCCTACAGTGATGAAGAGTGACATGGAAACATAAGTCACTCCCCAAGTTACTCCCCAAGTTGCTTTGGTTATGGAGTTTTAATCACAGCAATGGTGACCTTGCCTAAGGCACCAACTGAACTATCTCTTCAGTCCCTCTCCCTGAGGTGTTTTCAAATTTTCTGATGGATGATAGCCTGTGTCTGATGCTGCTGTCCTCGGTTCCTCTGCCAATCTGCTGCCAAAATTATCTTTTCAGAATGTAAACCTGAAGACCTCCTGCCTAAAGCTTCTCTAGAACCACTCGTGGTCCTACGTCATGATGTCATAGTTTTGAAGTAGACACAGTATAGAACTATAATGCCCGTTCTCTGTCCCCCTTCCCAACTCCCTTTACCCAAGAGCAGCAGAGTGATTAGAATTCTTTCATGTTCCCTTTCTTTGCTGGGATATCTCAACTCCTTTGCTCTGGATGCTCCTCCACTTCCTACTCCAAACCCTTTTGTCTTTCAGCCTTTTGTCTTTTTCATCTGAAATGTTATCTCCAATGGAAAAATGTCTCAGTCCTTTCGTCCTCCCTCAACAGAGTTTGCCCTACTCTCTGGACACATCCTCCCTCCACAGTGCAAATGAAGTTACTTAGGTGCTCATTTCTGGGCAAAGAGCCCTTTGAGGCTGGGGACTGTGTCATCCTAGGATTATTGGGTGATAAACAGTCTAATTGCAGCCACTGGGAGCAAAAAGATGAACACTGAATGTTATTTTTCCTTTCAGGGTCTTGTAAGGTACAACTAGAATCCAAGAGTTTGGAGCCGTTTGATGTTCATCACTGTGACAAATACCTGACATCATTAAGTTTTAAGAGAAAATGCTAGCTTAGAGTTTCAGAGGTTCCAATCCATGGCTAGCAAGACTTGTGGTTTGGAGCCTCTGGTAGGAGTGCTGATGCCAACGGAACTTGTGTAGAATGGCTCATCTAGTGGTCTGTACCACTCATTTGGTGGGGAGTGCGCCCCAAAGACCTAAGACCTCCAAGGCCCTTCTTCCAAAAGACCCATAGCATCTCCTAACAGTGCCACCCTGGAGGCCAATTTTTTAATGGATAAACTTTGGGGAACATTCCACATCTAAACTATAGGAAGATAGACTATTGGAATACAGCATTTGGGACATGAGAGCCAATGGGATTGAGTGGCCAGTTCTACTTGATATTAGCAGACTGCTGACCTCAAGGTCACTTAATATAGTACCAAACCCAAAGGGTCATCATAGTCTTTAAACATTTCACTACGGGTCCCTACAAAACATTTCCTCATAGTAATTTTGTGCTAATTTTAAGGATGCCATGATTTCCTATTGAAGTTTTAGTCACATACTTACGAGCAACTTAGATGCTAAAAGCACCAGCATTTCACTCCAAGCTGATTGTACTGTACAAGGATCTGCCAATCACACAGCAGGGAAGGCACCCATAGGCTCATCCTTCACTAGACGCTGCAGTTGTTCGTAACTAGAGTTGAGTAGCTCTTACTATGCTGCTGTCTCTTTTAGGATAGCTAGCTGCTGATCTGTCCTTCCTCAGATTATGTAAGAAGGCCAGTCCACTCAAGCAGGGGAGCAACCCCCCCCCCAACTCACTAGTTGACTCTTATTTCACACAAAGCACCACAGGGAGCCCTAAAGAGTCTCTAAAGAAAGGCTTTTACATAAGCTCAAGGATAGCTATTGGCAACTGAAGCTAGCTCCCAGTTTGTTCTCCAGAAAAATGCATGGGTTTATATCACACTGCCCATAGATGCCTTGATTTTTTTTCTTTTTTTCTTTTTTTAACTTTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCCAAAGTCCCCTATACCCCCCCCCCCACCCTGCTCTCCTACCCACCCACTCCCACTTCTTGGGCCTGGCATTTCCCTGTACTGGGGCATGTAAAGTTTGCAAGACCAAGGGGCCTCTCATTCCTATGATGGTCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGTTCTGGGGATACTGATTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTAGCCGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATGGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGATGCCTTGATTTAAGGAGGCTTGTAGCAAGCAAACATTGACATCTACAATCAGTGCCGTTTATCCCTGAATCCCCTGGGCATATGTATCAAGGGCATTCATTTTGCCTCTTCAGTCTTTTTCATCCTCAAAATATATGTTGTTGTTTTTAAAGACAATAGTCACATAAAGTGAAAGGTATCGAGTAAGTTACCATGGTTACAGATACATTCTTCTTTTTCTCTTTCATATTTCTAAGTAATAACTTGTGCTTTTATATTTGACTTGACAATTAAAAAGTCAGCTTCTGGTATCAGCATAAATCACTACTCATAAATCATTACTTTGAACAAAGAACAGACATATACAAAGAACCTGATTTGGTTGGCTAATAGAAATTTGCAAACTATTTCAGTCTGGAGTTTTTGTAATCTGAAAATTTAGCCCATTGTCAGTAATCAATAGATTTTTTTTTTTCTTCTTCTAAATGCATTTGTCTTTTCTTTTTGTTTGGGTTTTCTGGCTCCCTCTCTGTCCTGCACTACCTCTCCAG
Seq C2 exon
CTGTGTAATGGGGGCTCTGTCACTGAGCTTGTCAAGGGCCTTCTGAGGTGCGGCAAGAGGCTGGACGAAGCTGTGATTTCCTACATTCTGTATGGAGCCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064:ENSMUST00000112241:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(22.9=97.7)
A:
NA
C2:
PF0006920=Pkinase=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types