MmuINT0107213 @ mm10
Intron Retention
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52159477-52160748:-
Coord C1 exon
chr2:52160656-52160748
Coord A exon
chr2:52159570-52160655
Coord C2 exon
chr2:52159477-52159569
Length
1086 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
CTGTCCCCATCTCCATGTAGGTC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTTATATAAAGAGGATGTATCCCCGGGGACGGCAATTGGAAAGACGCCTGAGATGCTCAGAGTGAAGCAAACGCAGGACCACATTAGCTCG
Seq A exon
GTAAGGACACGTCAGTCACTTGTGCCATTCTCCGCCTGTCTTGGATAAATCTGTGACTTCTGAGTTACACTCAGAACTTGACACCAGAAACAGTGTCCAACCTAAAAGCAGGTGCCTGTGCACTGCCGTCATCACATGCTATATGCTAGTGGAGGTTTTGATGAAGACGAAAATAGCTGTGGAAAGCAGAGGCTTATGAGAAACTACATCCACATCAAAGAGTAAGCCTTTCTGGAGACTCGTGTGTGGCTACATCTGTCCTAAGCAAGTGGACTGTTGGTTATGAGAAGGCTGGTGGGCAGGAGGCCTCTTCCTACTTCTACATACCCTGATTCCAGTTGCCTCCCAAAACTGTGAAATGGAAAAGCCCAGAAAAATAATCCTTTCTGATAATATAAATCTATGGCTTCCCATCTTATCCTACCTGGGGCACGAATCATCCCTTCATTCAATATAATCCAGAAGGAAGTGCACACTGCCTGTCCTCGCTAGCTGCCTGCATTGGCAGATTTTACTCCTGCAGTGTTTGTGTACAGTAGCCATAATTTTATTAGTGACAGCCCCAGAGTAAAGAGGAACAATGCTACCCAGTCAGATAAGCCCAAGAGCTTCACAGTGCTCCCTCTGTGTAAAACAAAAACAAAAACAAACAAACAAACAAAAAAAACCAGCAAAGTATTGCACAAAGGAAGTACAAATGCTGGAGGCTGAGGTTGCTTGTGATAGAATAGAATAAATTTTCTATCTATACATTTGAAAAAGAGGTGGAAGGGAAAACGTGCTTGTTTGCTGCCGTGGCTCAGAACTGGAAAACAGGAAGCCACCACGCATGGCAAGCACTAATTAAGAAAAAGGCGGGGGCAAGTGGACCTCTTGTGAGTCTGAGGTCAGCCTGGTCTACACAAGTGAGATCTTGTCTCGAGACAACACAGAACTAAAGAAAAGTTATGTGTGACTCTGTGGTAGGATGTGTCCTAAATATTACAATCTCCAACCCCCGTGAATACAGGACACTGATCAACCACACATATGTAGTAGGAAGAATTCAGCATGCAGTAACACCTTTCTGTCCCCATCTCCATGTAG
Seq C2 exon
GTCAAGTATAAAGAAGCAATCGGACAAGGAACTCCGATCCCTGACCTGCCCGAAGTGAAACGCGTCAAGGAGACCCAGAAGCACATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950:ENSMUST00000075301:139
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.848
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(61.5=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(30.8=25.8),PF0088013=Nebulin=PU(66.7=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types