GgaINT0049817 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36820366-36821387:-
Coord C1 exon
chr7:36821283-36821387
Coord A exon
chr7:36820459-36821282
Coord C2 exon
chr7:36820366-36820458
Length
824 bp
Sequences
Splice sites
5' ss Seq
TCGGTACAG
5' ss Score
3.7
3' ss Seq
TCTTGATTCTAAATGTTAAGATT
3' ss Score
2.31
Exon sequences
Seq C1 exon
CTTCAGTATCAGTGGGACCTACAGAACAGTAAAGGGAAAGTTACAGTTGTACAAGATACACCAGAAATGCTGCGTGTGAAAGAGAACCAGAAGAATTTCAGCTCG
Seq A exon
GTACAGTTATTTTCCTGTTTTCAGTGCTCATTCCAAAGAAAAAAAGCCCTCACAGAGTTTAATGTGATGTGTTTAATACAGTAATTATTTTAGGCTCTTCCTCAAAGATACTTTCATTCTTCACCTGCTGAAATGTGTGTAAGATGTTTTTTCCAACCTAGTTAGTTTTATTCTAAGCAGATTTAGCTGATTTATGCTACTCCTTTTTATGCACTGTTATTTGTGGAGTGCTCTGGTTGCAGTCTTTTTCATGTATTTAGCTGTCATATAGCTAAACTATCATCCCTGTGATTAAATGTTACCAGTGTCCACCTTTCTTTTGTTCTGCTGCCATGTAAGTAGTGCAGTCTTGCTGTATTGCAACCTTTTTCTTTCAGTGGAAAGTGAATTGTCTGCCTGATGTGTTTCACGTGTCTTGTGTTACCATGAAGTGCCTATTGTCTGCTGTATCATTTTGCCACCCCTACCATTAGCCTAATGGATGGAAGAAATTTGTGTGAAACATCCCCAAACAAACTGGAACTGGAAGCACAAACTAAGCTAGTATTTGTTCTAGTTGTTCATTGCTAAAAATGTTTTGATGTTCTACTTAAAATAGATGACTACAAATACAAATGATCAGCCCTGTTTTTGCACAAATGGCACTCATTGTAAACGAGACTTGAGGTAGGCAGTAAATCAGTGACTGCAGGTGGTCCTCCATGTTTGCTTTCATTCTGCACTGTTGTGTGCACATCACTGTCATGAAACTGTATTCACTCTCTTGGAGAAATAATGTTGTGTTTTGAATGCTTAACCTTGTTGTCTTGATTCTAAATGTTAAG
Seq C2 exon
ATTTTGTATAAAGAAGATATTGGAACTGGAACTACTATTGAAAAGACGCCAGAGATGCAGAGAGTTAAAAGAACCCAGGATGCAATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:129
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.645
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(66.7=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(59.3=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGTATCAGTGGGACCTACA
R:
CGAGCTAATTGCATCCTGGGT
Band lengths:
198-1022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]