MmuINT0109744 @ mm9

Intron Retention

Gene

ENSMUSG00000026923 | Notch1

Description

Notch gene homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:97363]

Coordinates

chr2:26323752-26325237:-

Coord C1 exon

chr2:26325125-26325237

Coord A exon

chr2:26324324-26325124

Coord C2 exon

chr2:26323752-26324323

Length

801 bp

Sequences

Splice sites

5' ss Seq

GCGGTAGGT

5' ss Score

9

3' ss Seq

CCATCCTCTCTCCACCACAGGGC

3' ss Score

10

Exon sequences

Seq C1 exon

GACGCCGCTGTGAGTCAGTCATCAATGGCTGCAGGGGCAAACCTTGCAAGAATGGGGGTGTCTGTGCCGTGGCCTCCAACACCGCCCGTGGATTCATCTGTAGGTGCCCTGCG

Seq A exon

GTAGGTGTCCCTGGCCCTGTGCGGCTGCAAGGGTGCCAGGTCTGAGGGTGCCTGAACCCTGACCGACTCTTATGGTGGATCTGTCCTCCACCCACCCTCACTGTGAATAGTCAGCCTGAAGACCTCTAGCAGAGGCTAGGGTCCAAGCCACATGCTTCCTCGTGTCCATTCCCCAGCTCGTTTATAAAACCCGAGCGGGCACGATCCATACATGCCTTGCTCCCAGTGCTCTGCAGCCTCAGGCTGAAAGATTGCCTTGTATTTGAGGTACCTTAGGCTTCACAACAAGACCCTGTTTAAAAAGTTTATTTCCTGCTGTGCTATGTTGGGAACCTCACACATGCTGGGCAAGTGTTTTGCCACTGTGTCTTAGCCCAATTTTTTAAATAGATGTTTATTTTAGAGCGGTTTTAGGTTTGCATGAGAACTTAGCAAGAGGGCCAGGTCCCCACCCTGCAGGCCGTTCCCTATGTTTGCTGCCTTGCGTGGAAGGTGTTGAGCTGGCACTAATATGCAGTATTTGCTCTTGGGTGTTGACATCCAGGGATCTGTACACATACAATGTACCAGCATCAGCCTTGGGTTTCATGGCTCTAAAAACTCCTAGGGTTCTCCCCATTCACCTATCCCTCCAGTTTGAAGCCCTTGGCAACCCTGACCATCCTATGGTGAGATGTTTCAAGGGTCTTGTTATTGGGGCAAGGCCATAGACACCTTTCACAGGCCACAGACTGGGGCCAGGTCTTTGCTGGGGTGTGCATGGTGTCCCTGATTGAATGCACCATCCTCTCTCCACCACAG

Seq C2 exon

GGCTTCGAGGGTGCCACATGTGAGAATGATGCCCGCACTTGTGGCAGCTTACGCTGCCTCAACGGTGGTACATGCATCTCGGGCCCACGTAGTCCCACCTGCCTATGCCTGGGATCCTTCACCGGCCCTGAGTGCCAGTTCCCAGCCAGCAGCCCCTGTGTGGGTAGCAACCCCTGCTACAATCAGGGCACCTGTGAGCCCACATCCGAGAACCCTTTCTACCGCTGTCTATGCCCTGCCAAATTCAACGGGCTACTGTGCCACATCCTGGACTACAGCTTCACAGGTGGCGCTGGGCGCGACATTCCCCCACCGCAGATTGAGGAGGCCTGTGAGCTGCCTGAGTGCCAGGTGGATGCAGGCAATAAGGTCTGCAACCTGCAGTGTAATAATCACGCATGTGGCTGGGATGGTGGCGACTGCTCCCTCAACTTCAATGACCCCTGGAAGAACTGCACGCAGTCTCTACAGTGCTGGAAGTATTTTAGCGACGGCCACTGTGACAGCCAGTGCAACTCGGCCGGCTGCCTCTTTGATGGCTTCGACTGCCAGCTCACCGAGGGACAGTGCAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000026923-Notch1:NM_008714:24

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF0000822=EGF=PD(6.1=5.3),PF0000822=EGF=PU(79.4=71.1)

A:

NA

C2:

PF0000822=EGF=PD(14.7=2.6),PF0000822=EGF=WD(100=15.7),PF0000822=EGF=WD(100=16.8),PF0006612=Notch=WD(100=19.4),PF0006612=Notch=WD(100=19.9),PF0006612=Notch=PU(12.8=2.6)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000028288