MmuINT0112735 @ mm9
Intron Retention
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144807276-144811580:+
Coord C1 exon
chr3:144807276-144807380
Coord A exon
chr3:144807381-144811494
Coord C2 exon
chr3:144811495-144811580
Length
4114 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTTTGAAAATTCCACTTAGGTT
3' ss Score
5.5
Exon sequences
Seq C1 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATGGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTAGAGAAG
Seq A exon
GTGAGTTTGAAATTGAAGTAATGAAGTGTTTTCATGTGTGCCTCACGTGACCCCTGCAGGTGTGCTTCTTCTCCGTCCTCTCCCAAGTGCACGGCCGCAAGTGGCCTTTTCCAGGCTTGGCCAGAGTTTAGCCTTTCCTCTTTCTCCCGTGCTGCAAATGTTGTTTATTTGTATGAACATCTGTTTGCTTTTTTATTCATATTTGAGAAATAGCATAAATGCCTCATTTTTTGTTATAAAAGCTTAAAGTTTAAAAGGCCCAATTATTTTTTTTCAAACAGCATAAAGAAAAATGTATTCCATTAACAATAGTGCATGATGGACTGACTGTGAATCTTTACCAAGATTTATTGCTATTATGACTACTTTAGCCATTCTGTTAGGTAGGTAGTTGTGCCTTATTGTGGTTTTCATTGGCATTTCTTAATCGCTAATGATATTGACTATTTTTATTTGTTTGTTTTTTGTTTCTTTCTTTTTAAAAATTGGATAATTTCTGTATTTACATTGAAATGTTATCCCCTTTCCTGGTTTCTACCCGTCGTCATCGTCCCCCCCTCCCCCCCCCCCAGAAATCCCCTGTCCCATCCTCCCTCCCCCTGCTTCTATGAGGGTGTTCCCCCACCCACTCCCACCTTCCTCCCTGGCATTCCCCTACACTGGGGTATTGAGCCTTCACAGGACCAGGGGCCTCCCCTCCTACTGATGCCCACAAGACCATCCTCTGCTACATATGAAGCAGGAGTCATGGGTCCTTCCATGTGAACTCTTTGGTTGGTGGTTTAGTCCCTTGGAGCTCTGGGTGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGAGGTTGCAAACCCTTTCTGCTCAAAAAGCCCAATTATTATCACTGAGGCCCACCAGCAATAAAATGCAAACTACTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATCTTTTTATGTCTTTAGTAACTAAAAGAATTGCAAAGTAAGCTATTCTCTGGTAAATGCATTTTGGAAAAAAAAATGATATCTTGAAAACCCTCTCCTTTTATTCATCCATTTGTGACAGAAGGAAGGGAAGCCAGTGTTGGCAGGTGATGATGTTTTTGTGAATAGTTTTAAGTTTTTTGATGGAGCCACCTTCTCTTTTGGATTTCACATTGTTTTGGTAAGGAAAAAATGAGAGTCATAGGATAGGGATTCCTGGCCAAGAGGTCAAGAGCGTCAGGGGTTAGGCGCAGTCTATGGCTGCTGTCGCTGCACTGCTGACCCATTTTGAGACTGGGGATTAGGAGGAGGCATCTCTGTCAAGACAGGGTCAGCCTGAGCTGGCCGTCAGGCCACCTAATAAGGTGCTGTTCTTAGAGCTGTTCTCACCTGTTTTAGCAGACACAAGAGGATGCCATTACAAGTCCTTGTTGTTTCTCACCAGACAGTCTCATGCACATCCCCTCTGCTGCTCGGGAATGCAGTGAAAGCCCAGGTCAAAGCCACAAAGGGGAGGAACCGGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGCAATGCCCTTATAATATTTGCTGTGATAAAACTAGAAAAGTATGTTTGTTTGTCTTTTACAAAAGGAAGTCTTCTTTTTATTTCTCTGCTGCTTGAGTCTCCTCATTTTTCTCCTAGGATCTTGTCTGGGTAGAGGTTCAGAGGTTGCTTGCTTATCTTTTGTCTTCATGGCCAGAGGGTGCATGTGCTGTGAGTGCTCAGCTCAGACACCTTCTCCCTCTTGAAGTCCCTCCATGGGAACACCCTAAATGTCACCTTTTAGCTGTTTACAGTTACAGAGAGCAATGCTGCGTTCCTTAGGCGTTATTACTACGGCACTCTCTTCTCCGTGATTATGGAAGTGTCACAGTAAGAAGGGCAGGGGGTGAGGGGAGTATTGTGGCTACTCACCATGACAGCAGTGACCAGATGCAGTCATCTGAGGACGTGCAGTAGCTGTCCTGAAGCAGTGCTCAGCCCCCCCCCCCCCGCGACCCCCCCCCCACACACACAGAAAGGGCAGTGAAATGACAGTTACTGCAGAGCTGAGGGCAGACCAGTGGGATGGAAGCACACCCATTCCTTAGTCACATGTGCTGATGTAGGCTGATAGTGCTATACTTATTTGCCTGACAGCCTATCTGAAAACTAATTAATTTTACTTAATACGTCTCATGTAAATTAGCACTTGTAAGGTACTGATTAATAACAAGCTTGTCTTGTCCTTAAGATAGTAAGACTATTCCTGCCAAATTTGTGACCTTGAATTTATTTCCCCTAATGCCACACCTCAGATGAGAGGCCAGGTGGAGTCGAATCTGAAGCAGGTAGAGCAAGCCCGCAGCTCCTTCACGTCAGCCGAACAGAGACTTCAGGAGTGTCAGGAGAAGCTGCAGCGCTGCAAGGAGAAGTGTGCAGAGCAGGCGCTCACCATTAGGGAGCTTCAAGGCCAGGTGTCCATCAGCTCTGAGTCTTGGAAGATGTGTTAAAGAAACATTTGACGACGTCATTTCAGCAGTTGACGGCACGCGTGTCATCTATATCGCTGATGCAGTATTTCATGCAGATACTCGGCTGTTTATCTTTAGTATTTCCTGGTGACACTGGTCATAAAGATGGCTGATATGGGTGATTTATATGCATCTGCATTTGGACTTGGAGGACATAGTGTGGTGATGTAATGAGAGGAGGGCCAAGCCGGGCTTGCCTATCTGTTTCTTGACATCAGCATAAGACAAATAATAATTTACCTTGCAAAAATCAGAATGCATTTTAATTAGAATTGTGCATCACACTTATTGGGGTAATTCTATTCTTTCACTTAATACCTATCAGTCCATCCGCATAGGACTGTGTGACCTTGTCACCATACATCTCCCTCCTCCTCCCTCGGTGCGTGTCACAGAGCGCGCACACTTTGTACCTGCGTTAGGGCTACTTGGTGGTTTGTTGGAAGCGTGTCTGAGTCTGCAGGCCAGTCTGTTTCCTTACTTGTAAGACATCTCCAGGAAGAATTCACTTTGTGCCTTTCAAAAGAAACTTATTTAGCTTTTAAAAGACACAAAGCAAAATTCCAAGAAGAAATTCTACTAGAAAAAAACAATGCTACTTTAATAAGAATAAGAAAAGTTATTTTTTATGCTATGTGTGTGTGTGTTTTGCCTGCATTTCTGTGCACCACATGCATGTAGTGCCCAAAGTGGCCAGAAGAGGACATCATAGTCTGAGCTACCGTGTGGGTGTGGGGAATATAACCTGGGTCCTCTGGAAGAGAAGCCGGTGCTCACAACTGCTGAGCTATCTCTCTAGGCCTGAAGAGAAATATTCTTCTTATTAAAGCTACTTAAACTCTTTGAATCAGACTGTGAAGCAGTGGGAAGAATGGTCTGTTCTGACCTGAGCAACTTTGTCTTTGACTTTGACTCAGCATTGTCACAGGTAGTTCTCTATCAGTATTTTAAGTGGAGCATTGTTGATATGAGAAACATATCAATTAACATGGGAAACATAACAGATTAACTGTCTAATGAACAATGTTGAAATTTTTCACACACACATTTTTTAAGTTTTGTCTTGTTCTTGTTGGGGTTTTGTTTTGGAGGCAGGGTTTCATGTAGCCTGGACTGGCCTCAGTCTGAGGATAGACTTGAATTTCTAGTCCTCTTTCCTCTACTTCCTGAGCCAGGATTGCAGCACAAGCTTTCTGTAGTGCTGGGTTTGTACATGCTGGGAAAGTTGTTGCCAGCTGAGCCACATCCCTAGTCCCTGACAAGCTAAATGTTCCTTTTCATTAGAACCCTGTTCAGAGTATTTTAATTACCATCACCCAGGAAAAAATGTACTTCATTTTCTAACATAAACAACATCAGCTTTTAAAACTCTGTGAGGATCTGGAGAACTTGTAGATTAGCATTGTAAACATGGCTTGGTGTCTTTCTGTGTATTCATATCTTCTTGTTTCTTATACTTCTAAATAAAATACGTAATTTCCTTGGAAGTTGATGAAGAAAATAACTGAAAAAACCTGTCTTTTTCTTTTCTTTCTTTGAAAATTCCACTTAG
Seq C2 exon
GTTGATGGAAACCAAAGCCTTCTGACCAAGCTTTCTCTTGAGGAAGAAAATCATCTCATTCAGTTAAAGTGTGAGAACCTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-Odf2l:NM_025714:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(26.6=100),PF059116=DUF869=FE(13.7=100)
A:
NA
C2:
PF059116=DUF869=FE(11.2=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: