HsaINT0117838 @ hg38
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86356444-86358891:-
Coord C1 exon
chr1:86358787-86358891
Coord A exon
chr1:86356603-86358786
Coord C2 exon
chr1:86356444-86356602
Length
2184 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TCCCTACTGCCACAACTCAGATG
3' ss Score
3.84
Exon sequences
Seq C1 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATAGTAAAAAGCAGATGTGAAAATTTGCTACATAAAAATAACCAAATAACAAAAACCAAAAATAAAAATGTAGAGAAG
Seq A exon
GTACGTTTGGAATTTCAAATAAATAATATTTTATATATTTTTTACTTTATGAATAGTACACAAATTCATTCATTTTGGTCATTTTCTCTAGTTCATACTTAGGAAAGGGCTAGTCTTAGCCTCTGTAAGAGTTTGTTTTCCAAGGAAATAATGTTTCTTCCAGGCTGGAAATGTTGTTTGTTTATGTGAATGTTTTTTCACTTTTTTGTTAATATTTGGAAAATAGCATAAATGTTTAATTTTTCTGATGCAAGAGCAGACTTTAAATAGCTCAAAAAATGGTTATCAATCATAAGTATACAAACCTAAGTATCTCTCATTTTTAATCTCACCCTTTTTTTCTGGTTATAAATGTTTTACGTCTACAAAAGCAAAGCCAATATCTGCTAAATGCATTTTTGAAGAAAAATAATATCTTTTAAAAAACGATCATTTCCTTTTATTTGTTCTATTGCAACAGAATGAAGGGAAGGCCAGTGTTGGCGAGTTATGATGTTTTTGTGAATATTTTAAAATTTTTAAATGAAACCGCATCTCTGTTTGGTTTTTTGTGTTGTTTTGGTAAAGAAGCAGTGAAAGTTGTAGGATGCTGACTCCTGGCAGCAGAGGTCATGCGATGTTAGTGGTCGCTTCCATCTGAATCTAATAAGGTTACTCTCTCTGGGTTGCTCCCTATCTTAGGATTGAGAAGTCAGAGCAAGGCAATAATGTGAAGAAGAGGTCAGCCAGAGCAAGCGTCCTCCAGTTATACAGACATAAAGATAGCTCACTGAATGCACAACTTACTGCTTTCATGGAATTACTTTTCACCTATTTTTAGCAGGCCAGCGAATAAACCATTTCATGTCTTTTGGTCTCATTTTCTCATGAAACATACCAGTGCAAATGTCTCCTTTTCTGCTAGGCAGCACTGTAAATAAAAGCATATTTTACAATCCTGTTCAAATGACGGAAAGGGTTGGAGCCTGTCTTTTTCAGATACTGTGAGGTCACAATGTTTTCTAACTAGTATTTAACAAGACAACTATTTTTTTAATGAAATTTTTCTTTTTCTTACTTCACTGTTTTAAGTCTCCTGGTTTTCTCATGGCCTCTAAGATGTTTTAAGGACACTGAGGGATCCTTTGTTCTGGATCCCTCAGTGTCCTTAAAACAGACATTTTTCAGTCTGTTTTTTTTTTTTCCTGTTTTACTTTATATACCATCAGAATATGGATCATGTGTATCCTGTTAGTAGCCACATAGCCTTCTCCTAGCTCAATGCCTAGCACGTAGTAAGCACTCAATATTTTTTTAATTAATGAAATTTTTTTTAAAGGAGCAGTCCAAGGATGGCGACAAGTCTTTTTTCTTTTACTTTCAAGACAGTTTTAGGAAGCATTCCCTGTCTGTCTTCCAAATATAATCTGGATTTTAATTTTGCAAAAAAAAAAAAATACTGCATTATCTTTCCTGATCAAGAATGCCAGATACTACACAGAAACTATTAGGTGTTCCTGTCTCAGGGAAAGAGTCTGGCTATTTTTTGTAATTAGCAGTGCAAACATTTCTTAAGGTTGCTGCTTTTCACATCTCCACGAAAGTGCTGCAGCGAGGAACTGCAGTAGCCAAAACAGATTAATGTAGATGAAATTAGAGAGATTTGTTGATAGTAACATTAATGGCCAAATTAAAGGCAAGTGAGAACTGATGATACTAGCAATTTTTAAATAATATACAGTAAACCCTATCAGTTTTGGCTAAGATGAGTGAAGCAAGCTGCTCTAATTTAAGTAAGTATCTGAGTTATAAGATTGAATGACTAAAAGTGACAATTCCTTTAGAACCTATAGCTGGGCAGTAGACAATTACGGCTTTATTAGTAATGGTTATTAGTGATAATCTATGCTTGAATATAATGTCAGGATTTTAAAAATTTGCTCTTAAAAATTAGTTAAACATCCACCCTGTCAGCTAATTTACCCTATTTATGTGCTCAACAAACTTTTTGAAAACTAAAGTCTACCCCACTTTTTAGTTATACATTCTTATTTAACAGAGTTTAATATTTATTCAGTTGTGTTCTTATTTAAAGCCATTATACCTAAAATACTTACGTTATAAGCATATCTAGTATTTAAGATAATAAAAATATTAATGCTGAATGTGTGATCTTGCACTTATTTCCCTACTGCCACAACTCAG
Seq C2 exon
ATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCGTGTCTGCGATTCCTTGACGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAGGGGAAGTGTGCAGACCAGGAACACACCATTAGGGAGCTTCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417:ENST00000359242:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.153
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(11.9=100),PF115593=ADIP=PD(21.6=85.7),PF131661=AAA_13=FE(16.6=100),PF059116=DUF869=PU(8.1=45.7)
A:
NA
C2:
PF0003816=Filament=FE(18.2=100),PF131661=AAA_13=FE(25.4=100),PF059116=DUF869=FE(26.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development