HsaEX0044604 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86354774-86358891:-
Coord C1 exon
chr1:86358787-86358891
Coord A exon
chr1:86356444-86356602
Coord C2 exon
chr1:86354774-86354859
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCCTACTGCCACAACTCAGATG
3' ss Score
3.84
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
Exon sequences
Seq C1 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATAGTAAAAAGCAGATGTGAAAATTTGCTACATAAAAATAACCAAATAACAAAAACCAAAAATAAAAATGTAGAGAAG
Seq A exon
ATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCGTGTCTGCGATTCCTTGACGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAGGGGAAGTGTGCAGACCAGGAACACACCATTAGGGAGCTTCAGGGCCAG
Seq C2 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'40-45,'40-34,46-45
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.153 C2=0.015
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(11.9=100),PF115593=ADIP=PD(21.6=85.7),PF131661=AAA_13=FE(16.6=100),PF059116=DUF869=PU(8.1=45.7)
A:
PF0003816=Filament=FE(18.2=100),PF131661=AAA_13=FE(25.4=100),PF059116=DUF869=FE(26.3=100)
C2:
PF0003816=Filament=FE(9.8=100),PF131661=AAA_13=PD(5.4=37.9),PF059116=DUF869=FE(14.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCAGCTGAAATAGTAA
R:
TGTTGAAGGTTTTCACACTTCAGC
Band lengths:
180-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development