GgaEX0009700 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16713924-16717392:+
Coord C1 exon
chr8:16713924-16714028
Coord A exon
chr8:16715131-16715289
Coord C2 exon
chr8:16717307-16717392
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACTGTGATAATACTGTGCAGGTG
3' ss Score
5.84
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
GTACGAGAATTAAAAGCAGAAGTAGAAGTACTGAAATCCAGGTATAAAATCATCTTCAGTGAAAACAAGAGTATAAGAGAAAGCAAATGTTTAGAAGTCTATGAG
Seq A exon
GTGAGGGACAAAGCAGAGCCTAAGTTGAAGGTGTTAGAACATGTTTGTGGTTTACTGAAAGCAGCTGAAGGAGAACTGCGAGGATTTCAAGAAAATCTTGTCTACTGGGAAAGGATCAACACACAGAAATGCAAAACCCCCAGGGAGCTGCAGGTTCAG
Seq C2 exon
GAGGAAGATGGTGTAAATTCTGTGGGTAATTGCTCCTTAGAAGAAGAAAACAGTACCATTCAGAAGAAATATGAACATCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'18-22,'18-19,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAATTAAAAGCAGAAGTAGAAG
R:
TCTTCTGAATGGTACTGTTTTCTTCT
Band lengths:
170-329
Functional annotations
There are 0 annotated functions for this event