MmuEX0032973 @ mm9
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144807276-144811580:+
Coord C1 exon
chr3:144807276-144807380
Coord A exon
chr3:144809727-144809885
Coord C2 exon
chr3:144811495-144811580
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCCCTAATGCCACACCTCAGATG
3' ss Score
3.71
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
Exon sequences
Seq C1 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATGGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTAGAGAAG
Seq A exon
ATGAGAGGCCAGGTGGAGTCGAATCTGAAGCAGGTAGAGCAAGCCCGCAGCTCCTTCACGTCAGCCGAACAGAGACTTCAGGAGTGTCAGGAGAAGCTGCAGCGCTGCAAGGAGAAGTGTGCAGAGCAGGCGCTCACCATTAGGGAGCTTCAAGGCCAG
Seq C2 exon
GTTGATGGAAACCAAAGCCTTCTGACCAAGCTTTCTCTTGAGGAAGAAAATCATCTCATTCAGTTAAAGTGTGAGAACCTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256_MULTIEX2-6/6=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.029 A=0.132 C2=0.034
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(26.6=100),PF059116=DUF869=FE(13.7=100)
A:
PF059116=DUF869=PU(3.6=11.3)
C2:
PF059116=DUF869=FE(11.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCAGCTGAAATGGTG
R:
CTTTAAGGTTCTCACACTTTAACTGA
Band lengths:
179-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types