MmuINT0112721 @ mm9
Intron Retention
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144807276-144809885:+
Coord C1 exon
chr3:144807276-144807380
Coord A exon
chr3:144807381-144809726
Coord C2 exon
chr3:144809727-144809885
Length
2346 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCCCTAATGCCACACCTCAGATG
3' ss Score
3.71
Exon sequences
Seq C1 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATGGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTAGAGAAG
Seq A exon
GTGAGTTTGAAATTGAAGTAATGAAGTGTTTTCATGTGTGCCTCACGTGACCCCTGCAGGTGTGCTTCTTCTCCGTCCTCTCCCAAGTGCACGGCCGCAAGTGGCCTTTTCCAGGCTTGGCCAGAGTTTAGCCTTTCCTCTTTCTCCCGTGCTGCAAATGTTGTTTATTTGTATGAACATCTGTTTGCTTTTTTATTCATATTTGAGAAATAGCATAAATGCCTCATTTTTTGTTATAAAAGCTTAAAGTTTAAAAGGCCCAATTATTTTTTTTCAAACAGCATAAAGAAAAATGTATTCCATTAACAATAGTGCATGATGGACTGACTGTGAATCTTTACCAAGATTTATTGCTATTATGACTACTTTAGCCATTCTGTTAGGTAGGTAGTTGTGCCTTATTGTGGTTTTCATTGGCATTTCTTAATCGCTAATGATATTGACTATTTTTATTTGTTTGTTTTTTGTTTCTTTCTTTTTAAAAATTGGATAATTTCTGTATTTACATTGAAATGTTATCCCCTTTCCTGGTTTCTACCCGTCGTCATCGTCCCCCCCTCCCCCCCCCCCAGAAATCCCCTGTCCCATCCTCCCTCCCCCTGCTTCTATGAGGGTGTTCCCCCACCCACTCCCACCTTCCTCCCTGGCATTCCCCTACACTGGGGTATTGAGCCTTCACAGGACCAGGGGCCTCCCCTCCTACTGATGCCCACAAGACCATCCTCTGCTACATATGAAGCAGGAGTCATGGGTCCTTCCATGTGAACTCTTTGGTTGGTGGTTTAGTCCCTTGGAGCTCTGGGTGGTCTGGTTGGTTGATATTGTTGTTCTTCCTATGAGGTTGCAAACCCTTTCTGCTCAAAAAGCCCAATTATTATCACTGAGGCCCACCAGCAATAAAATGCAAACTACTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATCTTTTTATGTCTTTAGTAACTAAAAGAATTGCAAAGTAAGCTATTCTCTGGTAAATGCATTTTGGAAAAAAAAATGATATCTTGAAAACCCTCTCCTTTTATTCATCCATTTGTGACAGAAGGAAGGGAAGCCAGTGTTGGCAGGTGATGATGTTTTTGTGAATAGTTTTAAGTTTTTTGATGGAGCCACCTTCTCTTTTGGATTTCACATTGTTTTGGTAAGGAAAAAATGAGAGTCATAGGATAGGGATTCCTGGCCAAGAGGTCAAGAGCGTCAGGGGTTAGGCGCAGTCTATGGCTGCTGTCGCTGCACTGCTGACCCATTTTGAGACTGGGGATTAGGAGGAGGCATCTCTGTCAAGACAGGGTCAGCCTGAGCTGGCCGTCAGGCCACCTAATAAGGTGCTGTTCTTAGAGCTGTTCTCACCTGTTTTAGCAGACACAAGAGGATGCCATTACAAGTCCTTGTTGTTTCTCACCAGACAGTCTCATGCACATCCCCTCTGCTGCTCGGGAATGCAGTGAAAGCCCAGGTCAAAGCCACAAAGGGGAGGAACCGGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGCAATGCCCTTATAATATTTGCTGTGATAAAACTAGAAAAGTATGTTTGTTTGTCTTTTACAAAAGGAAGTCTTCTTTTTATTTCTCTGCTGCTTGAGTCTCCTCATTTTTCTCCTAGGATCTTGTCTGGGTAGAGGTTCAGAGGTTGCTTGCTTATCTTTTGTCTTCATGGCCAGAGGGTGCATGTGCTGTGAGTGCTCAGCTCAGACACCTTCTCCCTCTTGAAGTCCCTCCATGGGAACACCCTAAATGTCACCTTTTAGCTGTTTACAGTTACAGAGAGCAATGCTGCGTTCCTTAGGCGTTATTACTACGGCACTCTCTTCTCCGTGATTATGGAAGTGTCACAGTAAGAAGGGCAGGGGGTGAGGGGAGTATTGTGGCTACTCACCATGACAGCAGTGACCAGATGCAGTCATCTGAGGACGTGCAGTAGCTGTCCTGAAGCAGTGCTCAGCCCCCCCCCCCCCGCGACCCCCCCCCCACACACACAGAAAGGGCAGTGAAATGACAGTTACTGCAGAGCTGAGGGCAGACCAGTGGGATGGAAGCACACCCATTCCTTAGTCACATGTGCTGATGTAGGCTGATAGTGCTATACTTATTTGCCTGACAGCCTATCTGAAAACTAATTAATTTTACTTAATACGTCTCATGTAAATTAGCACTTGTAAGGTACTGATTAATAACAAGCTTGTCTTGTCCTTAAGATAGTAAGACTATTCCTGCCAAATTTGTGACCTTGAATTTATTTCCCCTAATGCCACACCTCAG
Seq C2 exon
ATGAGAGGCCAGGTGGAGTCGAATCTGAAGCAGGTAGAGCAAGCCCGCAGCTCCTTCACGTCAGCCGAACAGAGACTTCAGGAGTGTCAGGAGAAGCTGCAGCGCTGCAAGGAGAAGTGTGCAGAGCAGGCGCTCACCATTAGGGAGCTTCAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-Odf2l:NM_001162538:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF115593=ADIP=FE(26.6=100),PF059116=DUF869=FE(13.7=100)
A:
NA
C2:
PF059116=DUF869=PU(3.6=11.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: