GgaINT0038674 @ galGal4
Intron Retention
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14945513-14946878:+
Coord C1 exon
chr8:14945513-14945617
Coord A exon
chr8:14945618-14946719
Coord C2 exon
chr8:14946720-14946878
Length
1102 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ACTGTGATAATACTGTGCAGGTG
3' ss Score
5.84
Exon sequences
Seq C1 exon
GTACGAGAATTAAAAGCAGAAGTAGAAGTACTGAAATCCAGGTATAAAATCATCTTCAGTGAAAACAAGAGTATAAGAGAAAGCAAATGTTTAGAAGTCTATGAG
Seq A exon
GTAAGTTTTGCAGTAGTATAGTAGGCTCCCAAACGGTTCTGTGGGACATTGATCCTACAGATGTTAATGCAATCCACTTAATAGAAGTAACAATGTACTGGCTCTTTTTATTTTTCCATGTTAAATCTGAATTTAATTGCTTTATTAACTTCTGAGTGGGTGTCTTTTGCGTACTACAAAACTGCAAATAGCTAGGAAGAAAATGAGTTGAAGACAAATGACAAAGGAGTTGGGCTGCTATTTTAGAATTTGTTCCATCCCTTTAAAAAAAAAATGTTTCTGTTGATTTTAAAACTAGATCTCTCAGCAGAGCATCTATGAAAGTTGTGTAGGAAATAAAATCCACTGCAAGACTGTTCAGTGGTGTAAGTTTGATTTATGCAGCAGTCAAAAGCGAGAACCAACACAGAGACAAGTTATAAGTTTTTTCAGCAGGTGGAGCTGAATACTGGAACATGGTTTGCACTTTAATCATCAGAAAACATCATAGAAAAGTAGCAGGAAAATGAGTTTCCTCAGTTTCACTACTCATAACATTGCATATATTTTTAAGCAACAGGGCTGAAACAGGGTCATGTTTTCAGTTGCCTGCTGTGACTTTAGAGAATAGAATTAGTTCTCAACAAACAGCACCTGAGATGTTCATTTTATTTTATACTCATTGTTTTCCCTCCATTCGTCTACAGAATGGAGAAAAATACTTTCTGATCCCATAAGTAATATCTGTACAGCATTGTGTGCAGCTTTAGGTGTTATCAGTTGTTGTCTTCTTTTCAAATACTGCAGAACTTGTTTGGCTAGAATTTTTCCTGTAAGCATGCAATTTTCTACAATCTATTATGATAAAAATCAAAATTTGGATGTTGCTAACACTTGCATAATTTTGTAAATGTTTGTTATCAGTGTTCCTAGTTGCCAACTGCATGTTATGAGAGAAAATTCTCCAATGAACTTATCACTTTGGGTTTTCTGATGAAACAGATGACGCTATGCAACTTGTGTAGAATTTTAGGTTTACTACTTGCATGGAAAGCTGTTAGGTATCATAACAGTTAATCATAGCTTTAGACTTACATCTTTCTACTGTGATAATACTGTGCAG
Seq C2 exon
GTGAGGGACAAAGCAGAGCCTAAGTTGAAGGTGTTAGAACATGTTTGTGGTTTACTGAAAGCAGCTGAAGGAGAACTGCGAGGATTTCAAGAAAATCTTGTCTACTGGGAAAGGATCAACACACAGAAATGCAAAACCCCCAGGGAGCTGCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804:ENSGALT00000038838:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAATTAAAAGCAGAAGTAGAAG
R:
CTGAACCTGCAGCTCCCTG
Band lengths:
262-1364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]