HsaEX0044604 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86820457-86824574:-
Coord C1 exon
chr1:86824470-86824574
Coord A exon
chr1:86822127-86822285
Coord C2 exon
chr1:86820457-86820542
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCCTACTGCCACAACTCAGATG
3' ss Score
3.84
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
Exon sequences
Seq C1 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATAGTAAAAAGCAGATGTGAAAATTTGCTACATAAAAATAACCAAATAACAAAAACCAAAAATAAAAATGTAGAGAAG
Seq A exon
ATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCGTGTCTGCGATTCCTTGACGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAGGGGAAGTGTGCAGACCAGGAACACACCATTAGGGAGCTTCAGGGCCAG
Seq C2 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX1-1/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.160 C2=0.007
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(11.1=100),PF115593=ADIP=PD(23.1=94.3),PF131661=AAA_13=FE(16.6=100),PF059116=DUF869=PU(7.4=48.6)
A:
PF0003816=Filament=FE(17.0=100),PF131661=AAA_13=FE(25.4=100),PF059116=DUF869=FE(22.5=100)
C2:
PF059116=DUF869=FE(19.2=100),PF127182=Tropomyosin_1=PU(8.9=37.9),PF041117=APG6=PU(16.9=79.3)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCAGCTGAAATAGTAA
R:
TGTTGAAGGTTTTCACACTTCAGC
Band lengths:
180-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)