HsaEX0044606 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86820457-86821690:-
Coord C1 exon
chr1:86821625-86821690
Coord A exon
chr1:86821330-86821534
Coord C2 exon
chr1:86820457-86820542
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTACTTTCAAGGCA
3' ss Score
8.48
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
AATATGGATCATGTGTATCCTGTTAGTAGCCACATAGCCTTCTCCTAGCTCAATGCCTAGCACATA
Seq A exon
GCAGTTTTAGGAAGCATTCCCTGTCTATCTTCCAAATATGATCTGGATTTTAATTTTGCAAAAAAAAATACTGCATTTTCTCACTTAAAAAGTAGGAGCTAAATGATGAGAACACGTGGACACATGGAGAAGAACAACACACAGTGGGGCCTTTCAGAGGGTGGAGAGTGGGAAGAGGGAGAGGATCAGAAAAAATAACTAACAG
Seq C2 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.061 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF059116=DUF869=FE(19.2=100),PF127182=Tropomyosin_1=PU(8.9=37.9),PF041117=APG6=PU(16.9=79.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCATGTGTATCCTGTTAGTAGC
R:
TGTTGAAGGTTTTCACACTTCAGC
Band lengths:
148-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)