HsaEX0044606 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86354774-86356007:-
Coord C1 exon
chr1:86355942-86356007
Coord A exon
chr1:86355647-86355851
Coord C2 exon
chr1:86354774-86354859
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTACTTTCAAGGCA
3' ss Score
8.48
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
AATATGGATCATGTGTATCCTGTTAGTAGCCACATAGCCTTCTCCTAGCTCAATGCCTAGCACATA
Seq A exon
GCAGTTTTAGGAAGCATTCCCTGTCTATCTTCCAAATATGATCTGGATTTTAATTTTGCAAAAAAAAATACTGCATTTTCTCACTTAAAAAGTAGGAGCTAAATGATGAGAACACGTGGACACATGGAGAAGAACAACACACAGTGGGGCCTTTCAGAGGGTGGAGAGTGGGAAGAGGGAGAGGATCAGAAAAAATAACTAACAG
Seq C2 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX1-3/4=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0003816=Filament=FE(9.8=100),PF131661=AAA_13=PD(5.4=37.9),PF059116=DUF869=FE(14.1=100)
Main Inclusion Isoform:
ENST00000531412fB4850
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCATGTGTATCCTGTTAGTAGC
R:
TGTTGAAGGTTTTCACACTTCAGC
Band lengths:
148-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development