HsaINT1025579 @ hg38
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86354774-86356602:-
Coord C1 exon
chr1:86356444-86356602
Coord A exon
chr1:86354860-86356443
Coord C2 exon
chr1:86354774-86354859
Length
1584 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
3' ss Seq
AACTTTTTTTTTTCTTTTAGGTT
3' ss Score
12.2
Exon sequences
Seq C1 exon
ATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCGTGTCTGCGATTCCTTGACGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAGGGGAAGTGTGCAGACCAGGAACACACCATTAGGGAGCTTCAGGGCCAG
Seq A exon
GTGTCCAGCCGTCCTTCTGAGTTTTGCTAGATGCGTTAAAAGAATGCTTTGGAATGATTTCACCAGTTGAGGGCACTCATGTCAGGGCTTGATTTTTAAATTCCCATCTACTTAGTTCGTAAAACATCATTTTCATGCAGATACTATAATACAGTTTTGCAAGCTATTCTTTTAGTATTTTATGGTGAAAAATTGGTAATTAAAATTCTTATTTTAGTTTATTCATGCAAATCTATAGACATTTGAAGACATGGTAATAGAATGAGAGAAGGAGCAAAGTTATACTTACATATATGTTCCTTGATGTAAGGATAAGGTAAATTATTGAAACTTACATTACAAAAATTGAATTTATTTTAATTAGAATTGTACGTCAAGTTTTTTGGGATATTTTTCAGTCTGTTTCTTTTTCCTGTTTTACTTTTTATACCATCAGAATATGGATCATGTGTATCCTGTTAGTAGCCACATAGCCTTCTCCTAGCTCAATGCCTAGCACATAGTAAGCACTCAATATTTTTTTAATTAATGAAATTTTTTTTAAAGGAGCAGTCCAAAGATGGTGACAAGTCTTTTTTCTTTTACTTTCAAGGCAGTTTTAGGAAGCATTCCCTGTCTATCTTCCAAATATGATCTGGATTTTAATTTTGCAAAAAAAAATACTGCATTTTCTCACTTAAAAAGTAGGAGCTAAATGATGAGAACACGTGGACACATGGAGAAGAACAACACACAGTGGGGCCTTTCAGAGGGTGGAGAGTGGGAAGAGGGAGAGGATCAGAAAAAATAACTAACAGGTACTAGGCTTAATACTTGATTGATGAAATAATCTGTACAACAAACCCCCATGACACAAGCTGACCTGTGTAACAAACCTGCATTTGTACCCCTGAACTTAAAAGTTAGATAAAAATATGCAGACAAAATTTTAGTTTAAATTCCTGAGAAGAGATTTTTCTAGTAAAATGTCAAACGACATAGATTAGCCTAAATTACTAATTGAAATTATGAGAAAAAAATTTTTTCCTTGAATCAAAGCTTCTTACATTATTTAGAGCAGATTTTGAAGCAGTGGGAAGAATATTCTGTCTTGGCATGGGTGAGTGTGTCTTTGGTTGATTTGTTCACTTTGCTTCTCAAAAAAATATGTATTTTATTTACAGTTTCGACTTCACAGATACTCAATTATTAATCAGTATTTTTAGGTGAAACAGAAAACCATAAGAGAAACCCTAGGTATCCAAAAATAGGAGATTAATACTGCTTAAAATTTTCCTATTTCAACTTAACAAAATAAATATCTTTCTTCAATAAGGTGTTGTTCAAAGTGTTTTAATAGCCATCATCCTGAATTTTTTTTAGTTGGTTATTTTCCAATACAGGCAACATAACTTCTTTAAATTTAACCAGGAATTTAAAACTTCCATTTTAACAATATAACATTTTCTTGGTGTCTTTCTGTGTAAGAGTAGTAACATTTATACCTTCTCGTTGCTTGTGGTTGTTCTAACAATAAATTATATGGATTTCTTTGGAAGTTGATTGTGAAGAAAATGACTAAGAAAACTTTTTTTTTTCTTTTAG
Seq C2 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417:ENST00000359242:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(18.2=100),PF131661=AAA_13=FE(25.4=100),PF059116=DUF869=FE(26.3=100)
A:
NA
C2:
PF0003816=Filament=FE(9.8=100),PF131661=AAA_13=PD(5.4=37.9),PF059116=DUF869=FE(14.1=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGCCAGATGGAGTCTCA
R:
TGAAGGTTTTCACACTTCAGCTGA
Band lengths:
240-1824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains