GgaINT0038675 @ galGal3
Intron Retention
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16715131-16717392:+
Coord C1 exon
chr8:16715131-16715289
Coord A exon
chr8:16715290-16717306
Coord C2 exon
chr8:16717307-16717392
Length
2017 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
AGGAATTGTTATTTGTGCAGGAG
3' ss Score
4.02
Exon sequences
Seq C1 exon
GTGAGGGACAAAGCAGAGCCTAAGTTGAAGGTGTTAGAACATGTTTGTGGTTTACTGAAAGCAGCTGAAGGAGAACTGCGAGGATTTCAAGAAAATCTTGTCTACTGGGAAAGGATCAACACACAGAAATGCAAAACCCCCAGGGAGCTGCAGGTTCAG
Seq A exon
GTGCTTTGTTTGTACAGTTTTTTAAAGACAAATGAGGAAATTATGTAGAAGTTCTCCAGAATAATTTTTCCTATTAGTGTTTGTGATGGTTAAACTGTTTCCTTTGTTTGCTTCATAAATCAGAAGCTGAGAAAGTATTGCCAAGTGTATTTACATTAATTCAGTATGGGAGAAGAAATTCTAGTTATTTATGTTTACTTTTCTATTTTGTATCCTTAATTTAATATATTCTCTGTCCTTTAGAATAGCTTTGTCCTGACAAGTCTTTCAGAATTCTTCTCTGAAAATAAATGTGCAAATCTAATTATTGTTTGTATCTTGGGGAGTAATTTAATACTACATTCATTTTGGTTTTTGATGACCAATTCACAAACCGGACAATATCTGCTCAGAAACATAGCTATAAATTATGTTTTCATGATTACTTCAGCATTTTAATGAATACATCATAAAGGTGGGTAAAAAGAAATGAAATATCTGCTTCAATAAAATATTTTCCATTTTTTAGCAGCATGTTAATGCTACTACTTTTATTTTCCCTTAAGGCCTGAATCTAAACGTTTCTCAGCATTCTTTAGCTGTGGCATCCATTTCCGTGGTTTGGGCTTTACTTCCTTTTTTTGTTTGTTTGTTTTATTGTGCTTTGGGTTGGAAGAGAAAAATTTGCTAGCACAAATGACACAGGTGTTTGAATCAGTAGGGTGGGAAAAAAATTTAATCTTCCTGTGTGTGGAAGACATGCTGACTTCAGCTGAAACACAGTGAGTCTCTGTGTCTCTACATGCTTTATTCTTTAAAATGTAGATCTTGATTTTTCTTTTCCAATTTCCTGTCATTATCATCATTATAGCATCAAACTTTGCTTGTTTCTGTCATTATGAATACTTGTTTCAGAAGCTCATGAATCCATCTTTGCCTAGTGAATTACTTAAGCAATAATTAGTTTAGAGGTGCACATATAAAATTATGTCTATTTTTAGTTTTACTACATATTTTTATGAATAAATTTAAAAAATCATCTTAAGTATAGTGGAACTAATTGGGGAATATAAACACTAGGCTGATAAACAGCAGTTGAATTTTGGCAGTAAATCTTGATTATGTCCTTCAGATGTTCTAATCGTATGATTAGATTTTAGAAGAATTCCTTTTGAAGAAATTGGACCATGTGCAGACGCTCTTTTCTGTGCTCATCTGGACGGGGACATCAGCCTACTGCCCCTCTGCTGAAAGCATATTTTACTATCATTTACTATTTATTTTACTGTTAATAGAACAGCCTGTAATTGTATAACCAAACTCAGACATGTTAGCTCAAGTTACTGAATGGAACTGCTTGATGTAGTCCAGTAAATGATGGAGATTGTCCTTAAATCGTCATACCAGCAGAACTGAGATGTGGCCATTTACTGCTGATCTCATGCTGATGGATGGTAGCAAGAGCAATAATCTCATTGCTACTGTTCCGAGAATTAAAAGTAAACATGTAAAAGTTAGTCAGTCTGGATGCTGGGTGGGGGTAAGACAGTTTGGCTTCTTTTTTTTTTTTCAGTCTCTTCTTATGGACTCAGTTGCCTTTTTTGATTATGCATACTATTGTCAGAAATCTTTGTCAGTACAACCCTGTTCTTCCATGATAATTGTGTATGTATGTATATATACATGTATGTACACTTATATATGCTGTATCATTTTTATGGTTCCTGTGGTTGTAGCAGTGAGGGAACTTATTCTTGCTGTAACCTAAAGCCTAAGTTCACAAGGAGATAGACATGGCTAATCTAAATACATGAGGCTACGTAAGCAGCATATGGGTTTCATTACGACTACACTTTGTTACACAGCACATCTTCGGCTCACATAAATTTTTAGTATTTCATTTTTTTTGAAAACCTGAGTATAAGATGTGTACTTGAACTCAAAATTAGATTGACTGGATTCTATTGGGCATACTTAATTTATTTTGTAATACTTTTGTATAAGTCTTTCCACTAGAAAGGAATTGTTATTTGTGCAG
Seq C2 exon
GAGGAAGATGGTGTAAATTCTGTGGGTAATTGCTCCTTAGAAGAAGAAAACAGTACCATTCAGAAGAAATATGAACATCTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804:ENSGALT00000038838:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]