HsaEX0044601 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86820457-86822285:-
Coord C1 exon
chr1:86822127-86822285
Coord A exon
chr1:86821028-86821066
Coord C2 exon
chr1:86820457-86820542
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCTTACATTATTTAGAGCAGATT
3' ss Score
-0.91
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCGTGTCTGCGATTCCTTGACGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAGGGGAAGTGTGCAGACCAGGAACACACCATTAGGGAGCTTCAGGGCCAG
Seq A exon
ATTTTGAAGCAGTGGGAAGAATATTCTGTCTTGGCATGG
Seq C2 exon
GTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTGGAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'23-26,'23-24,24-26
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(17.0=100),PF131661=AAA_13=FE(25.4=100),PF059116=DUF869=FE(22.5=100)
A:
PF0003816=Filament=PD(4.1=84.6)
C2:
PF059116=DUF869=FE(19.2=100),PF127182=Tropomyosin_1=PU(8.9=37.9),PF041117=APG6=PU(16.9=79.3)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACCAGGAACACACCATT
R:
TGAAGGTTTTCACACTTCAGCTGA
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)