MmuINT0113255 @ mm9
Intron Retention
Gene
ENSMUSG00000030162 | Olr1
Description
oxidized low density lipoprotein (lectin-like) receptor 1 [Source:MGI Symbol;Acc:MGI:1261434]
Coordinates
chr6:129438850-129443661:-
Coord C1 exon
chr6:129443524-129443661
Coord A exon
chr6:129438987-129443523
Coord C2 exon
chr6:129438850-129438986
Length
4537 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TCTATGTTAACATTTCCTAGGTC
3' ss Score
6.76
Exon sequences
Seq C1 exon
AGGAGTCCCAGAGAGAACTCAAGGGAAAGATAGACACCCTCACCTTGAAGCTGAACGAGAAATCCAAAGAGCAGGAGGAGCTTCTACAGAAGAATCAGAACCTCCAAGAAGCCCTGCAAAGAGCTGCAAACTTTTCAG
Seq A exon
GTACAGGGGAGGACTGGTGGGTGTTCAGCCCAGTCTTAATTAGGTTTAACAAAACCAGCACACTCCACATATGCCAAATATTCAGAGTGCCCTACACAGGCTCTCTGTTAGTGCCATTGCGCTTCTAGCCCATGGGAAGCGTAGTAACCATCAGAATTGTTCAAGCTCCCTTTTCATGGGCACAAGGGTTTCTTCCTTCTTTCAAATTCTGGCTTTGAGGTTTGGGCTGAAGCACTGTCCTGTCCCATTGTCACTTCTTGCCACAGATATGTTGTTGTATCCTTCCAAAAGCAACTTAGTCACTAGCCTCCCTTTCCTTGGCAGGGGGGTGGTCTTCATGTGAATGCAGCTCTTTAGCCCAGCTCCGTGTTAGCTTCATTCTGACCCTGTTTCTTAAATGGGCACTACATCTGTCTAAGTACAACAGTGGAGGTCAGCCCACTGAAGACTTAGGTGGATACTACAGACCGAACAAAAACACAAGGTCTGGAAAGTAGTTTTATATAGGAGTTGAGATAGTTTCATCTGTCTAAAGGTATTAAGAATCTAGGGAGCAGAGAAAGAATAGATTGTGCTGACCACCTTTGTTCTATTAGAGATTGCTACTACATTTCTGCAATATCGATCTTTTCTGCAGTGAAAACAATGAGATATGTGTTTCTAAGTACAGAGTTAGGTGTGATGGAGTCTATTTTACTACCATGTCTATTCACAGAAAATGCTCAAATAAGGGCACCATTTTCAGGATTAGCAAGTAAATGCCAGTAAAAAGCAAATTTGTCCAATGTCTTGCTTATGTGGCTAACAGTTTAAATGTGCAGTTTCTTTTAATACATATATAGTAACAATATAGGTGGCCATTCCTTCACTGTATAGGTAAAAATATTAACAGCAGGATAGAGTTTAACAGTAATAATGATGAGTGGTTAGATATTAAGTTACTTAGTTTATAAGTCTTTTCAGGCAGGCAGGTAGGTCCCTGAGTGCAAGGCCAACCTGGTCTACATAGCAAGTTTCAGGCATAGCTGCAGGAAGAGATTCATTGCATGTATGTATGTATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGTATTTTTGTATAAATGTGGTAATAGCAGGTAGGTCTCTGAGTGCAAGGCCAACCTGGTCTACATAGCAAGTTTCAGGCATAGCTGCAGGAAGAGATTCATTGTATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGTTATTTTTGTATAAATGTGCTAATTCAAATTTGCAAAACTAAACATTGAGTTTTAGACAAATAGACCTTCAACTAGTGTGGAATATATATTTAATTTCTCTACAGAGGAACTTTTCAATAAGTTAAAGGAATCCAACACTTCAAACCAATTTTTAAGAAATGGATTCTTAAATATCAACGATGGGAGTGTTTTCTTATGCAGACAGCCAAAATCCCAACCAGTGGTTTGTAGTAGTAAAACAGTTTACATTTATCACCTGAAAATTTTTTGGGATTCATCTGTGTCAGGTTCATGAAAAGCTCTCTCTCAGAGATGCCAGAAATGAACAACAGATCAGACACAGAGTATATATTTCCCTTTCTGGCAGATACATAGGTCTGGTTTTCCATTCCTTTAAATGTTAGATATATCCAATTAGTAGCAATCCCAGATGCATGCTTTGATCATGTGGCCTCAAGAAAAAAACACATAAAAATATCATAATACTGAAATCCCAGATGGAAAATGAGGCTGATGTTCTCAAATTTGCGGAAGGTTTTACCTGTCCTACTAACAGATCTGGTATGATTTACACAGAAGGAAAGGAGATATAGGGTCTTCAAAGGAATAGATTTTTTTCCATCTAGCATTAGATTTGGTGGTTCTTCCTAATCTGTATCTATGAAAATCGCTTGATGTAAATGGCCAGTTTCCTGTAGGCTCTTAAACCCTGAAAGAGCATGTCTAGAGCCCAAAGAGGAGTATTTCCTCAATTAGTTCATGCACAAAGACATTTGAGAGGAAGTGTCCTACAGTGGGTGTATCAGGTTCTGAAGAGAAACAGAAGCAATGAAATGACTACATATTTAAAGGGCACTTAATAAGTTGGTTTACATAATGTCTGGAGAATTCAACAATGGTTATCTTATACTATATGGGTGGAAAATTTGGCAGTTGATGACTAGAGAGCTTAGTTGTCTCACTTGCCATTGACTAGCACTGAGGTTCTGGAATATCCTCAAAGAGCTACTGATCTTCAGTCAATTTTGGAAGCCAGAAGAAGTTGATCATGGAAGGAACGCCACCATGGGATTGATAAAGTTGCCTGCAGAGTAGTTGTTCACTAGCACAAAGCAAAATTCTTTTCTCCCTCCTTGACTCTGTGTTGACACAGGAAGGAGATGCCCACATTTAGCTCTCCTGATTTCAAATAATCTGATTAAGAAAATCCTTCAGGGGCATGTCCAGCAGCCTGTAATTTAGTCCTTTCCAGATCCAGATAAGTTGGCAACCAAGGTTTATCAACAGACATTAAATACATATGCAACATTAGGTGCAAATTCCTAACTTCTTGATCTGTCATATGAAGATGATTAGTGGAGTCTGCCTCTTGAGTTTTACAATGATTAAATGGGTTCACATACGCAAAGTACCTCCAACCTTCTGTGCTTTGTAAATAATATTTGTATACATTAATTTGTATGTAATACTAGATATTGTTTTATGCTATATAATGTTTTACACAGACACACACACACACAGTTGGCTTTAAAATCACATATAGAGGCATGCCTTTCTCATTTTGGCATCATGTAGACAAAGTGTCTAGACCATTTCGTTAGTCCAAAAAACCTGATTTGTTTACACTTGCAACTGCAATGGGCTAGACTAATCATGAAGAAATTTGCACACCCTGCTTTAGACTCATGTGTCCCTTAAACGTTTCTTTCTGCTTTCATTATTCCAACATATTTCTACTTTATCATTTATGTACATACTTTTGTCCTTATAGTTTTGTTTATTTTTTATTGTTCATTTTAGATAGATTCCCACTCCATAGCCCAGGTTGGCCTAGGACTCATTATTTAGATCAGATTGGCCTTGAACTCATGGAAAGCCTCTTGACTTAGTCTTCTGAGTGCTGGGATTTCAGGCAAGAGCCACCACATTAGGCCTCCATTTGCCTTTCTGATGAACTTCACATGTATAAAATTATCAGATGATTTTGTTCCACAACCAAAATTTACATTACAATGTAACTCTCCTTAAGGACTTTCTCCCTGCTTTTGCCACACTGTAGGGCAAAAGGCAATTCCTTGTGTGCCACCATCACAACTGGGTTGGTGATGACTGTGCTGATGGTCTGGGAGTTCTCAGCACATAGATATGGATACTTTTACCTACTGCCTTCTCCCAGATTAGATTTGCTGGGTTCCTTATGCAATTTTTCTGCTAGGAACTTCTTAGTTCCAAAAATCTCACTGAAATTAAGAGTCTTCATTTTCTATCAATACAACATTCTCCCTAAAATAAACTTGTCCAAAAGAATGGGAGCCACTGTGCAGAGGTAAATTTTCTAGCATACATACTTGAGGAAGGAAAAAGAAGCAGATAAAATTAACTGTAATGACATAGGTTTCTTAACCAAAGCATCTGAAATATTAATTTAACATAAACCAGTGTGATGTTCTCAATGGGCTACTCTGCATGGCTCTGTCTAGCTCTCAAAGTCACATGTGTGCTTTAAATGCAAGCACAGTGTCTGCAAAGGTTTCACAAACTACACTGGGGACTATATCAGATAGCATAGGGATAAGAGAATGAGATAAAGTAGTGAAAACTAAGTTACTCAGAGAAATGGAGCTTTTAAATGTATATCTGACTTTGTAATAATAGAATTGCCAGTGAATATACCTTTCTTTAACTCTCCTTTTCAACATTTCTAATATAACTTTTAAAAAATCAAATTCTAAACTCATATACTAATCTATGTCTTCAAAAATGGTAGATGAAATGCTAAATGGACAGTCAGCTTAGATTATTAAAATCAGAATGCCTTATCTCTTTTTATTCGAAAGTATATATAGTTGAAGAATACACAAACACACACACACATAAAGGGAAGGAAGAGGAACTGTGAGGAGTGAAAATATAATGTATGAAAACCCTCTATTTTCAATAAAAAAAGAAAATATATAAAGGGAAATAAGAGTTGGAAAAATGACTCAGTGATTAAGAGTACTGTCTGCTCTTCCAGAGAACTTAGGTAGGGCAGCTACACAGCAGCTCATTGTGTCAACAATCCACTTCCAATAGATCTGACGTTAGCTTCTGGTCTCTGAGAGCACTGTGTGCATAAGGTGCATATAGATATAGCTTAGATACAGGTACAGATACACATACATCTATATGGGAAGTAAAGACTCTGGCCATTCTGGTGTCTATAGAATCTGGGATTTTTCCTAAGGAAGCATTGAAGAAATGTTTTTACTCAGAACTCATCCATTCTATGTTAACATTTCCTAG
Seq C2 exon
GTCCTTGTCCACAAGACTGGCTCTGGCATAAAGAAAACTGTTACCTCTTCCATGGGCCCTTTAGCTGGGAAAAAAACCGGCAGACCTGCCAATCTTTGGGTGGCCAGTTACTACAAATTAATGGTGCAGATGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030162-Olr1:NM_138648:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(24.8=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: