MmuINT0114007 @ mm9
Intron Retention
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53540264-53541233:+
Coord C1 exon
chr7:53540264-53540542
Coord A exon
chr7:53540543-53541115
Coord C2 exon
chr7:53541116-53541233
Length
573 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GGAGGGGATTGTCTTTCTAGATG
3' ss Score
3.93
Exon sequences
Seq C1 exon
ACCCTGACGTGGTGTCCCTGGAGGCGGCTGACAGACCCAACTTCTTCCTGCACACCACAGCCAATGGCTCTATAGGGCTGGCTAAGTGGCAGCGCGATGAGGCCTTCCATCAGCACGCTTCCTTCTCGCTGCACCGGGGGACATGGCAGGCTGGCCTGGTGGCTCTGGAGTCCCTGGCAAAGCCTGGCTCCTTCCTCCACTCATCAGGCCTTGAGCTGGCACTGCGGGCATACGAACACACGGAGGTGTTTCGTGGTGGTGCGCTCTTCCGCCTTCTGG
Seq A exon
GTAAGGGTCTGCCGGGGCATCGTTCTTGGATCTGGGGCTTCTGCCTCACTCGGTGGCATTCCCTGCCCTCTCTCCTCTTCTCTTTCCCCAGAGGGCAAAAATCTCAGCCTTTTGACAAAGGTGGAGGGCTCCCTGGGGTTTACCCCTGGAACAGGAGGTGGTCTGATCTCCATGCTGGCAGGTCAGGGAGTGGTGGCAGGATGGACTGAGACCTAAGTCACTCTTGTAGTGTAAAAATAGACAGTCTGTGTGAAAGTGAGAGGAACCGTGAGCCTGCTGGAGGCTCATAGTGCGCCTGGCTTCTGTTTCCTGCCGAGGGTACATATTGTCCCCATCCCTAGGAGTTTAAGGTACACCCGTGGGGACTCAGGGCTGAGAAGCTAGCAGGCTCTCCAGACCATGTCCCCAGTTGTCATGGATGCAGCCTGCTTAAACTCACTTCTTATTTTCTCTCTCTCTCTTTTTTTCTGGGTGTACTTACATGCCCTCACCACAGGGCTGAGCTGGGATAATTCTGGGCACTAGTGTTCAGCCTCTCTCAGTCCAGAGACTTGGAGGGGATTGTCTTTCTAG
Seq C2 exon
ATGCCAAGCCTTTGGGGGCTGCCTACCCCACCTGTGAGTGGCGCTACGATGCCTGTGCTAGCCCCTGTTTCCAAACCTGCCGGGACCCACGGGCAACCAGCTGCCAGGATGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-Otog:NM_013624:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052708=AbfB=PD(63.4=97.9)
A:
NA
C2:
PF0182612=TIL=PU(50.9=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAACTTCTTCCTGCACAC
R:
CACATCCTGGCAGCTGGTTG
Band lengths:
358-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: