MmuINT0114024 @ mm9
Intron Retention
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53559578-53560672:+
Coord C1 exon
chr7:53559578-53559618
Coord A exon
chr7:53559619-53560596
Coord C2 exon
chr7:53560597-53560672
Length
978 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGG
5' ss Score
7.13
3' ss Seq
ACTCCCTCTGTCACCTGCAGTGG
3' ss Score
9.4
Exon sequences
Seq C1 exon
AGTGTGACTGTGACACTATTCCTGTGCCCAGATGCCATCTG
Seq A exon
GTATGGAGACCCTGCCCTCTCCACCCACAACATTATTCTATTTCTCTTTCCCTCCCTTCTCCTCTCCTTCCCGTCTTCTGGAGAGTCTTCCTTTAACCTAGCTCAGAGAGCCCTGGATTTCAAATCAGCACAAGCTCTGCCCCTCACTCTGGGCACCCTGTCCTCTCTTTGGAGAGCCAGCTTAACTGTGCCGAGGAATAATTGCCAGATCCTGCAGATGGTTGTGATCATGGTGGAGATGCTAGGGAGGATGGTCACAACAGTGAAGATAATGATGGCCATAATTGATGGGTGATAATGATGGTGATGATGGTGGAGTTAGTGGGAGGGCAGTCAGGATGCTGAAGATGATGGAGGTGGTGATGATGATGATGATGGGAATGGTGACAGGTGGAGTTGCCCACTGGCAACCGCTCAGACTTTACCATTGGCCTGCAGTGTTCCAGGTCTTTTTAATGAATTATCTTATTAGTGGTTATGACAAGCCCAAGAGACTGATTCTGTGATGATCTCAATTATGTAAACAAGGGAGCTGAAATTATGGTCGTGAACTTGGTAAATTGCTGAGTCGGGATTAGACGCTTGTGAACCCTTAACCTCCAGGGTGCGTGGCCATTGGAGATGCGTATAAAGTTATACTAGGCTGTTTCTGGATTATGTACCCCGTGCCTTGTCCCAGCATACGTTGTCTCTCTCATGCTCCCCTCCCCATTCCCCTTTCTTCCCTGAAACTAGGAAAGAAAGTGGGGGACGTGGGTAAGGTGTGAGCCAAGTGGGTCTCTGTGGTGGTGGTTTCATGTCTTTCTTGCTGAGGGCAGGAGGCTAGACGGTGGGGAGAGTGGCTGAGCTTCTGGGTGCCAAAGGACCCCAGGTTGTCATCTTCTTCCTACCCACTGCACACGGGCCCAGTGGCAGGCTGTTTCTGAGGGTAGGGTTGGGTTGCCCGCTGTGGGCACTGACTCCCTCTGTCACCTGCAG
Seq C2 exon
TGGGAAAAGTCGCAGCTGGATGAGGAGTTTATGCACAGCGTGGAGAATGTGTGCGGCTGCGCCAAGTACGAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-Otog:NM_013624:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: