MmuEX0033300 @ mm9
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53558509-53560672:+
Coord C1 exon
chr7:53558509-53558607
Coord A exon
chr7:53559578-53559618
Coord C2 exon
chr7:53560597-53560672
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGGCTTCTTCTGTTTTTCAGAGT
3' ss Score
10.02
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTGTGAGAACTTCCGCTGCCCACAGGTACAGTGTGGCATGGGCACTTCCCTGGTGGAGGTGTGGAGCCCAGACCGATGCTGCCCCTACAAGTCCTGCG
Seq A exon
AGTGTGACTGTGACACTATTCCTGTGCCCAGATGCCATCTG
Seq C2 exon
TGGGAAAAGTCGCAGCTGGATGAGGAGTTTATGCACAGCGTGGAGAATGTGTGCGGCTGCGCCAAGTACGAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'49-50,'49-49,50-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAGAACTTCCGCTGC
R:
CCACGCTGTGCATAAACTCCT
Band lengths:
142-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: