GgaEX6037085 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11464338-11466420:+
Coord C1 exon
chr5:11464338-11464436
Coord A exon
chr5:11465199-11465239
Coord C2 exon
chr5:11466345-11466420
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCAATTGTGTTTTGTTTCAGAAT
3' ss Score
9.23
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TTTGTGAAATACACCGTTGTCCTGAATTCAAATGCATGCTAGGCATGTCTTTGGTGGAGGTATGGAGCCCAGAGAAGTGCTGCCCCTTTCGGACATGTG
Seq A exon
AATGCGCATGTGAAATGATCCCCAAACCTCAGTGCAAACTG
Seq C2 exon
GGACAGAAACTTCAGATAGATGAACAGTTTCAGAACAGTTCAGAAAATATATGTAACTGTGTTAAATACAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'63-62,'63-61,64-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAATACACCGTTGTCCTGA
R:
TGTTCTGAAACTGTTCATCTATCTGA
Band lengths:
133-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]