HsaEX6001060 @ hg38
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17638451-17640820:+
Coord C1 exon
chr11:17638451-17638549
Coord A exon
chr11:17639423-17639463
Coord C2 exon
chr11:17640745-17640820
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCTTGTGTTTTTCAGAAT
3' ss Score
10.13
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTGTGAGAACTTCCGCTGTCCCCAAGTGCAGTGTGGCCTGGGCACTGCCCTGGTGGAGGTGTGGAGCCCCGACCGCTGCTGCCCCTACAAATCCTGTG
Seq A exon
AATGTGACTGTGACACAATCCCGGTGCCCCGGTGCCATCTG
Seq C2 exon
TGGGAGAAATCCCAGCTGGATGAGGAGTTCATGCACAGCGTGGAGAATGTGTGTGGCTGCGCCAAGTACGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'54-63,'54-62,56-63=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGAACTTCCGCTGTCC
R:
CGCTGTGCATGAACTCCTCAT
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains