HsaEX6001060 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17659998-17662367:+
Coord C1 exon
chr11:17659998-17660096
Coord A exon
chr11:17660970-17661010
Coord C2 exon
chr11:17662292-17662367
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCTTGTGTTTTTCAGAAT
3' ss Score
10.13
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTGTGAGAACTTCCGCTGTCCCCAAGTGCAGTGTGGCCTGGGCACTGCCCTGGTGGAGGTGTGGAGCCCCGACCGCTGCTGCCCCTACAAATCCTGTG
Seq A exon
AATGTGACTGTGACACAATCCCGGTGCCCCGGTGCCATCTG
Seq C2 exon
TGGGAGAAATCCCAGCTGGATGAGGAGTTCATGCACAGCGTGGAGAATGTGTGTGGCTGCGCCAAGTACGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'50-56,'50-55,52-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGAACTTCCGCTGTCC
R:
CGCTGTGCATGAACTCCTCAT
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)