RnoEX6002845 @ rn6
Exon Skipping
Gene
ENSRNOG00000010983 | Otog
Description
otogelin [Source:RGD Symbol;Acc:1306610]
Coordinates
chr1:102319192-102321280:+
Coord C1 exon
chr1:102319192-102319290
Coord A exon
chr1:102320211-102320251
Coord C2 exon
chr1:102321205-102321280
Length
41 bp
Sequences
Splice sites
3' ss Seq
CGGCTTCTTCTGTTTTTCAGAGT
3' ss Score
9.95
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTGTGAGAGCTTCCGCTGCCCACAGATACAGTGTGGCATGGGCACTTCCCTGGTGGAGGTGTGGAGCCCAGATCGCTGCTGCCCCTACAAGTCCTGTG
Seq A exon
AGTGTGACTGTGACACTATTCCTGTGCCCAGATGCCATCTG
Seq C2 exon
TGGGAAAAGTCGCAGCTGGATGAGGAGTTCATGCACAGCGTGGAGAACGTGTGCGGCTGTGCCAAGTACGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010983-'53-52,'53-51,54-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATACAGTGTGGCATGGGC
R:
CACAGCCGCACACGTTCTC
Band lengths:
137-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]