BtaEX6058923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35419175-35421934:-
Coord C1 exon
chr15:35421836-35421934
Coord A exon
chr15:35420689-35420729
Coord C2 exon
chr15:35419175-35419250
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCTCCTGTTTTTCAGAAT
3' ss Score
9.76
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
TGTGCGAGAGCTTCCGCTGCGCCCACGTGCAGTGTGGCATGGGCACAGCCCTGGTGGAGGTGTGGAGCCCAGAGCGCTGCTGCCCCTACAAGTCCTGTG
Seq A exon
AATGTGACTGTGACACCATCCCAGTGCCCCGGTGCCATCTG
Seq C2 exon
TGGGAGAAGTCCCAGCTGGACGAGGCGTTCATGCGCAGTGCGGAGAACGTGTGTGGCTGCGCCAAATATGAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'53-52,'53-51,54-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCCTGGTGGAGGT
R:
CGCACTCATATTTGGCGCAG
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]