MmuINT0114160 @ mm9
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114932604-114933717:-
Coord C1 exon
chr7:114933593-114933717
Coord A exon
chr7:114932745-114933592
Coord C2 exon
chr7:114932604-114932744
Length
848 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AGACTCTTCTCACACTGCAGGGA
3' ss Score
6.22
Exon sequences
Seq C1 exon
ACTGTGTGTCTGGACCTTCCTGGTTCCAGAGGACATGCATATGTTGCTCAATTTGTCACACTTGGATATAGAGTCTTGTCACCACAATTACCTGGCAATGTACTCTTTAGAAGACAGACTCGTTG
Seq A exon
GTAAGTGGTTCTTCACGCTGTCATACGGAAAGCAGGGCTAAGTAGACTTAACAATGTCTGGTCACAATATGTCTGACATGGAGGCAATCGTAAATGCAGCAGTCTCCTCATCCAATTTTGAGAGTCTGCTCTAAAGTGGGGAGAATAGAGACTGAGCCTGCTGAGGGCACTTCAGCAGCTGCATCTGATACTTTTAAATCCAGGCTGCCTGGGTCATGACCCCATTACGAGTAAACTTTACACATATTGCTGGGTCCCCGAGTCACCCCAAGTAAGACACCACTTAACTATGGTTGCAAGTGGATTTTACCTGCCTCAAAACACTAAGAAGAACGACACCAAGTTATGCCCATGAGAAGACAAAGCTTATTTGTATAATAAAAATGAAGCCAGGCATAGTAGCACATAGCTGTAGACCTAGAATTTGGAAGACTGAGGCAGGAGGATTGCATGACCATGGCCATCTTAGTATATACAATGATATCTTGTCTCAAAGAAACAACAAATTACAAAAATAGAATAGGGTTTCTATGGTTCTCACCCTGAAGTAACTTTGTCCATCCCATTGGCAATATTTTAGAAGTATTTTTGGCTGTTACAACTGAAGAGAATATAGGAGATTATATAGAATATAGAAGAAACCATATTAAAAGTATGTACACTTTTTAAATCCTGCAAAAGTCAAAGAGCAACATAAACAGAACATTCTGGATCAAAATCCTACTAGTGCAAAAGCTGAGCAGCCTAATTCAGACAATCCTGAACTTCCAGGACAAGATGTATCTCCCTAGGGCATGTGACTAGTGCCATTTTCCAGACTCTGAACAAAGACTCTTCTCACACTGCAG
Seq C2 exon
GGAAATTCTGTGGAGAAAATCTCCCTTCATCCATTCTCATTGGCTCCAGTTCCATCCGGCTGAGGTTCATCTCTGATGCCACAGATTATGCCACTGGGTTTAATCTCACCTATAAAGCACTTAAGCCGAGATACCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-Ovch2:NM_172908:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(38.9=100)
A:
NA
C2:
PF0043115=CUB=PD(34.3=77.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTGTCTGGACCTTCCT
R:
GGATGGTATCTCGGCTTAAGTGC
Band lengths:
264-1112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: