BtaINT0106481 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45615558-45616583:+
Coord C1 exon
chr15:45615558-45615682
Coord A exon
chr15:45615683-45616442
Coord C2 exon
chr15:45616443-45616583
Length
760 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCTCCTTTCTTATTTTGCAGCGA
3' ss Score
12.26
Exon sequences
Seq C1 exon
ACAGTGTGCCTGGACCCTGTTGGTACCAGAGGAAATGCATGTGCTCCTCAGTTTTTCCCACTTTGATGCAGAGTCTTGTGACCATAATTACCTGTCAATATATTCTTTAGAAGACACACTTATTG
Seq A exon
GTGAGTGGATTTTCACATTGTCAAATGGACACTATGCTATTACTTAACGGGGCCTGGTTATAATATGTCTAGCCCCAAGGCATTTATAAACAGCACACTTCCTCTCTCCACTGTTGAGACTTAGAATTGATGGTGGAAAGGAACGCAATCTGAGCCTGTGTGAGGGCTGGAAGGCCACAGTGCATTTCACTTACTGCCTTTGCTTCCCATGGAACCAGGCTTCCTAGACTCATTTGCCAGACCTGGTACCCATCGGGAGTAAAATGCAGATCTACAGCTGTGCCTCTCAGGGCCTCTCGGGCAGAATGCTGCTCTCCTGAGCATGAAAATAACCTTTACCTGCCTCATCCAGCTCAGAAGGAAGACAGCAACAGATAACCACAAGTCGGAGACAAAAGTTACTTATGTAAGAAACAGAAATGGAGGCGCATTCCTGTGGTTCTAAACTAGAGATGGTATGGTCCGTCCCCGCTTTCCCCCAGGAGACCTTTAACAATGTCTCAGGAGCAATTTTTGGTGGTCACAACTAGAGGGAACGTTGCAAAACAATTTTGCAGCCAGGATGCCGCAAAACATCCTACAATGTGCAGAACAGCCTGAACACACAGAACGTTCCAGTTCAGAACATCAGTAGTGCCAAGGTTGAGAAGCCCTGATTCAGACAAGCCTGCCCTGTCATGAATGTTCAGGAACCTGTAAGTCTTTTAATGGGTGCTGTTTTCTAGGCTCTGAGAAAAGACTCTCCTTTCTTATTTTGCAG
Seq C2 exon
CGAAATTCTGTGGAGAGAGACTGGCTTCATCAGTTCTTGTTGGCTCCAACGCTATAAGGCTGAGCTTCATCTCTGATAACACAGATAATGCCGTTGGGTTCAATCTCACCTATAAAGCTGTTAAACCAAACTACCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(38.9=100)
A:
NA
C2:
PF0043115=CUB=PD(34.3=77.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGCCTGGACCCTGTT
R:
AGGAAGGTAGTTTGGTTTAACAGCT
Band lengths:
263-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development